BAC Information

Click to search

BAC

Clone NameMSMg01-121B24
Chromosome8 (Build37)
Map Location 68,308,624 - 68,309,187
singlet/doubletsinglet
Overlap geneMarch1
Upstream geneLOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967
Downstream geneLOC100040986, 1810029B16Rik, Tktl2, Npy5r, Npy1r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121B24.T7 (MSMg01no121_b24.b1)MSMg01-121B24.TJ (MSMg01no121_b24.g1)
ACCAG331320AG331321
length717743
length of high quality
(start - end)
258 (48 - 305)535 (72 - 606)
definitionCHROMAT_FILE: MSMg01no121_b24.b1 PHD_FILE: MSMg01no121_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:48 2005CHROMAT_FILE: MSMg01no121_b24.g1 PHD_FILE: MSMg01no121_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGAGGATCCG
CGGAATTCTTTTGTTACTGGATTACCTCACTCAGGATGATGCCCTCCAGG
TCCATCCATTTGGCTAGGAATTTCATAAGTTCATTCTTTTTAATAGCTGA
GTAGTACTCCATTGTGTAAATGTACCACATTTTCTTTATCCATTCCTCTG
TTGAGGGGCATCTGGGTTCTTTTCAGCTTCTGGCTATTATAAATAAGGCT
GCTATAGGGGAACACCAGGGCCAAGAAGTGAAAGTGGGTGGGTAGGGGAG
TGGCTTGTTTCCAATATTTTTTTTTTTTTTATAATTCTCCACATTTTCTA
ACTTATTTATTTTTTCTCCCCCCCCACCCCCCCATATCTCTTTACTAATT
TCCTTCCCCTTTTTCCCCCTTCCTTTTTCTCTCTCCTCCCCTCCACATTT
CTTTTCCTCTTTATTTCCCTTCCCTTTTCTCCCTCTTTCCCTTTCCCTTT
TCCCCCCCTCTTTCCTTCTCTTTTTTTTCCTTCCCCCCCTTTATTTTTTT
TTTTCCTCCTACCTATTTTATTCTTTTTCCCTTCTTATCCTTTCCCATCC
TTTCCCCTCCCCCCCCCCCTTTATATATCTCTTTTTCTCCCTTACATTCT
CCCCTCTTTCTTTCCTTCCCCCCCCCCCCCCCTTCCTTTTCTTCTTCCAT
TTCTTTCCTTTATCCTA
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCCAATTCCATAGTATGGTCACCTTTGTTCTCTTTATTTGA
AAATGCAACAATATTTGTACACAGTATGTGCCTGAGCATCACATACTAGA
CCTGGGGTTGATTCCTGCTATCTCCAATAGGAAAACCACTAGTCCACATT
TCTTCATGGGAAAATGAGTGGAAATGAAAATGGCTCCATGTCTGTCTTGG
TTGATTATGCAATTAAACAAAGATGCTAGTTTTCAGAGTGCCATAGAGCT
GTAGGCACATGCTCAAGAAGTAGATGGAGGAGGATCAAGGACATCTCAGG
TCCCATCATGAGATTCTGTCTTAAAAAGAATCTCTCACATGTATGATTTC
TAGAATTCATGTAATTACATAAGTGTGTGTGTGTGTTTATGACATGAAAG
TGAAAGGAAAATGTTTAGGGAGACAAAAGAGACACAGAAGGTTAAAAACA
GGTGGAGATATGTGAGAAGGAATGTCATCAGCAGATAGATAGATAGATAG
ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT
AGAGATCGCCCGGCCCCGCCCCCCCCCCCCTTCCTCCCCCCCTCTTCCCT
TCTCTTCCCCCCCCCCACTCTCCCCCCCTCCTTTTCTCTTTCCCCTCCCC
CATCCACCCCCTCTCTCCTCCCCTCCCCCCCCTCCCTCCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_b24.g1 MSMg01no121_b24.g1 CHROMAT_FILE:
MSMg01no121_b24.g1 PHD_FILE: MSMg01no121_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:48 2005
         (535 letters)



>mm_chr8_68308623_68309557
          Length = 935

 Score =  890 bits (460), Expect = 0.0
 Identities = 521/566 (92%), Gaps = 40/566 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtatggtcacctttgttctctttatttgaaaatgc-aacaatatttgtacacagtatgtg 59
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 565 gtatggtcacctttgttctctttatttgaaaatgcaaacaatatttgtacacagtatgtg 506

                                                                       
Query: 60  cctgagcatcacatactagacctggggttgattcctgctatctccaataggaaaaccact 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctgagcatcacatactagacctggggttgattcctgctatctccaataggaaaaccact 446

                                                                       
Query: 120 agtccacatttcttcatgggaaaatgagtggaaatgaaaatggctccatgtctgtcttgg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 agtccacatttcttcatgggaaaatgagtggaaatgaaaatggctccatttctgtcttgg 386

                                                                       
Query: 180 ttgattatgcaattaaacaaagatgctagttttcagagtgccatagagctgtaggcacat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgattatgcaattaaacaaagatgctagttttcagagtgccatagagctgtaggcacat 326

                                                                       
Query: 240 gctcaagaagtagatggaggaggatcaaggacatctcaggtcccatcatgagattctgtc 299
           ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctcaggaagcagatggaggaggatcaaggacatctcaggtcccatcatgagattctgtc 266

                                                                       
Query: 300 ttaaaaagaatctctcacatgtatgatttctagaattcatgtaattaca----------- 348
           |||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct: 265 ttaaaaagaatctctcacatgtatgatttctagaattcatgtaattacattgtgtgtgtg 206

                                                                       
Query: 349 --------------------------taagtgtgtgtgtgtgtttatgacatgaaagtga 382
                                     |  |||||||||||||||||||||||||||||||
Sbjct: 205 tgtgtgtgtgtgtgtgtgtgtgtgtgt--gtgtgtgtgtgtgtttatgacatgaaagtga 148

                                                                       
Query: 383 aaggaaaatgtttagggagacaaaagagacacagaaggttaaaaacaggtggagatatgt 442
           ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 147 aaggaaaatgtttagggggacaaaagaaacacagaaggttaaaaacaggtggagatatgt 88

                                                                       
Query: 443 gagaaggaatgtcatcagcagatagatagatagatagatagatagatagatagatagata 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  gagaaggaatgtcatcagcagatagatagatagatagatagatagatagatagatagata 28

                                     
Query: 503 gatagatagatagatagatagataga 528
           ||||||||||||||||||||||||||
Sbjct: 27  gatagatagatagatagatagataga 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)