BAC Information

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BAC

Clone NameMSMg01-121D11
Chromosome8 (Build37)
Map Location 15,570,020 - 15,570,143
singlet/doubletsinglet
Overlap genenone
Upstream geneDlgap2, C030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097
Downstream geneEG665619, LOC634008, Csmd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121D11.T7 (MSMg01no121_d11.b1)MSMg01-121D11.TJ (MSMg01no121_d11.g1)
ACCAG331385AG331386
length693691
length of high quality
(start - end)
124 (129 - 252)228 (119 - 346)
definitionCHROMAT_FILE: MSMg01no121_d11.b1 PHD_FILE: MSMg01no121_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:55 2005CHROMAT_FILE: MSMg01no121_d11.g1 PHD_FILE: MSMg01no121_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGCCGCTATACACTACTATTCCGAGAGATCCGCGGAATTCATGT
TTTCTAAAACAGGATGTGAAGTTGGGGACGTTAAAAATCCGCCAGACAGC
TGAAAGGGTAGACAAATAGAGCTGCACTTGACCCTAACCTCTTCCATTCG
TCTATGCAATTTTCAAGCAACACATACAATGATAAGTCAAATAAGAATGC
ATTTGGAATAAAATATACCCTGAGCCTGTCCGTACTGACAAGGATGTAGA
CTAGAATCATGCAAAGGATCATCTGAGTTAGGCAGGGATTTCTGTAGCAA
GAGGGAAGGGCCTGTTGTTGTCTGGAAATTGCCTAAAGTGGTAGGAGTGT
GTTTATTTTGCTATCCCCGCACCCCGCGGGCCATTCTCTATCCTGATAGG
AGTGTTGGGAGCTGCACTGAAATGTAACTGCTTTGCCGTCGCCTGTGCGT
ACTGCCTGTTCCGGCTGGCAATCCCTGCACTGTAGGCGTGATTGCTTTGT
CTATTTAGCGAGGCCATATTTATTCCATGTGAGAAACCTTCTATTTTTGT
CCTACCCTTTCCTCCCAAAAGTTACCACCCCCACCACATACTAAATAAAT
CTACTCCTTTTAGAATCGCACCTCCCACTTTTCTTTATAGATTGTTTAAA
AACTGCCTCGCTCGACGCCAACACCACACCTCTGACTTTCTTC
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTGTCCACGAAATTCTTTGTTTAGCTCTGTTCCCTACTTTTTAATA
GGGTTATTTGTTTCCCCGGAGTCTAACTTCTTGAGTTCTTTGTATATATT
GGATATCAACCCTCTATCAGATGTAGGATTGGCAAAGATCTTTCCCCAAT
GTTTTAGTTGCTGTTTTGTCCTATTGACAGTGTCCTTTGCCTAACAGAAG
ATTTGCAATTTTATGAGGTCCCATTTGTCCATTCTTGATCTTAGGGCATA
AGCCATTGGTGTTCTGTTCAGAAATTTTTCCCCTGTGCCCATGTGATTGA
GTTTTTTCTCCCCCCCCCCCCCCCCTGATAGATACAGTGTATCTGGTTTT
ATGTGGAGATCTTTGATACACATGAACTTGTGCTTTGTCTAGCGATATAA
GAATGGATCAGTTTGCATACTTCTATGTGTTAACCACCATCTGAACCACC
AACATTTGTTGAAACTGCCGTCTTTTTCCCACTGAACGGACTTAGCTTCT
CTGTCATATACCAACATACCATCCCTGGGAGTGTCCCTCTTTAGCCCCTC
AATTCCACTCCCCACGATTTACCTTGCCTGTTTTGCATACATATCCTGCC
ACGCTTATCTCTATCGTTTTTGTCTCCCCCCCTGCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_d11.b1 MSMg01no121_d11.b1 CHROMAT_FILE:
MSMg01no121_d11.b1 PHD_FILE: MSMg01no121_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:55 2005
         (124 letters)



>mm_chr8_15569820_15570343
          Length = 524

 Score =  232 bits (120), Expect = 5e-66
 Identities = 123/124 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaccctaacctcttccattcgtctatgcaattttcaagcaacacatacaatgataagtc 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tgaccctaacctcttccattcgtctatggaattttcaagcaacacatacaatgataagtc 260

                                                                       
Query: 61  aaataagaatgcatttggaataaaatataccctgagcctgtccgtactgacaaggatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaataagaatgcatttggaataaaatataccctgagcctgtccgtactgacaaggatgta 320

               
Query: 121 gact 124
           ||||
Sbjct: 321 gact 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)