Query= MSMg01no121_e22.b1 MSMg01no121_e22.b1 CHROMAT_FILE:
MSMg01no121_e22.b1 PHD_FILE: MSMg01no121_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:02 2005
(286 letters)
>mm_chr8_18166926_18167611
Length = 686
Score = 439 bits (227), Expect = e-128
Identities = 269/287 (93%), Gaps = 9/287 (3%)
Strand = Plus / Minus
Query: 1 gacaatttgatgactttcaaatctaggaagatattctagaga-taaaaactctcgtattt 59
|||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 644 gacaatttgatggctttcaaatctaggaagatattctagagattaaaaactct-gtattt 586
Query: 60 ttataccatggtcaggtaagaagaaacctttaaggattaggcatttatagttatgaagtt 119
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 585 ttataccatggtcaggtaagaagaaacctttaaggattaggaatttatagttataaagtt 526
Query: 120 taactggctcccttgactgtatggaaagcagccacaacaacaccagaccaagtgtgcaac 179
||||||| |||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 525 taactggttcccttgactgtatggaaagcagccagaaca-------accaagtgtgcaac 473
Query: 180 cagcctagagatgttggggtggtattccccaacgaatccttttgttgtggactcaacatt 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 472 cagcctagagatgttggggtggtattccccaacgaatccttttgttgtggactcaacact 413
Query: 240 gcacagaactggtctaactctgaggaagacctgcgtgagtaaatctt 286
||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct: 412 gcacagaactggtctaactctgaggaagaccagtgtgagtaagtctt 366
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no121_e22.g1 MSMg01no121_e22.g1 CHROMAT_FILE:
MSMg01no121_e22.g1 PHD_FILE: MSMg01no121_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:03 2005
(294 letters)
>mm_chr8_18087177_18087870
Length = 694
Score = 538 bits (278), Expect = e-157
Identities = 290/294 (98%)
Strand = Plus / Plus
Query: 1 actgataaccctaggagggatgttattttcttgttgtatgtcctttcccgtgtgattcta 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 actgataaccctaggagggatgttattttcttgttgtatgtcctttcatgtgtgattcta 260
Query: 61 aatacacccttaatagacacctaaatagagaaacgttcaagacagtaaaacccatacaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatacacccttaatagacacctaaatagagaaacgttcaagacagtaaaacccatacaat 320
Query: 121 caaaggagaaaatgcactcacgttctgccgcacatttcactttatctacctgcagacagg 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 caaaggagaaaatgcactcacgttctgcagcacatttcactttatctacctgcagacagg 380
Query: 181 agtaagtccccaccagaatctgtatagggatggccattcgactgccttctgtgactggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaagtccccaccagaatctgtatagggatggccattcgactgccttctgtgactggtt 440
Query: 241 agagatggctctgtgtccttgacgattgcttggtgtccatatggtatttcttca 294
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 agagatggctctgtgtccttgacgattgcttggtgtccatatgggatttcttca 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
