BAC Information

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BAC

Clone NameMSMg01-121M24
Chromosome8 (Build37)
Map Location 75,801,777 - 75,802,280
singlet/doubletsinglet
Overlap geneLarge
Upstream geneLOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3
Downstream geneLOC100039001, LOC666134, Crry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121M24.T7 (MSMg01no121_m24.b1)MSMg01-121M24.TJ (MSMg01no121_m24.g1)
ACCAG331829AG331830
length679714
length of high quality
(start - end)
391 (46 - 436)506 (70 - 575)
definitionCHROMAT_FILE: MSMg01no121_m24.b1 PHD_FILE: MSMg01no121_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:43 2005CHROMAT_FILE: MSMg01no121_m24.g1 PHD_FILE: MSMg01no121_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATATCGAGAGATCCGCGGAATTCAGAATTTTCCCAAATATAGGCA
TAGCTTTGGGAGAAAAGGCATTGAGAGTAAGAACATTGTTGTATCTTCAG
AGCAGGAGGAGAGAATAAGATTAGAAAAAGAATACAGAGTAGAATAACTT
AGAAATTACAGGTAACATAAAAAACCAAGAGATACCTAATAAAAATGGAA
AAAAAAATAAAAAAAAATAAAAAAATAAAATGAAGAAATAAAAAAAAAAA
AAACCAAGAGAGCAATATCAGAATGCAGAGGGAAAGAGGAAAAAAAAAAA
GACGCTGCAGAGAGCAGAGAGAGCAGGCAGGCTTACCATGAGACAAGCTT
AAATATCTCATAAGACAAAGTCTTAAGCCTGAATTTCATAAGACCAAGTT
TTACCCTCCGTGGCCTCAAGAAGAACGGACAAGAAAGAAGAATCCCACGC
CAGGGCTGGACCCTGGAACACTTAAACTGATACACTGTAGTTCAGAAACC
CCCACTGTGAAATGACTAGTCCTCTCTGACGGTATCTCTACTATGTACAG
GGCACTCTATTAGATCAGTGCATCTATGGGCACACCAGGTATTACAGGTA
AATGAGCACAGAGGAATGTCTAACCCCAGTTAAATCCTGCATAGACTCAA
CAGTTTCCACATGTGAGGAAAAGGGGAAN
TGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATTCCCAGCAACCACGTGGTGCCTCACAAC
CATCTGTAATGAAATCCGATAGCCCCTTCTGGTGTGTCTGAAGAGAACAA
CAGTGTACTCACATAAAATAAATGAATAAAATCTTGAAAAAAAAAGGGGG
GGAAAGGTCTATATGCCTACTAGACAACATTGGATACCTCTGCATTCAAT
ATCCTGGATGGAATGTCTATCTGCCCTTAGCACTGGGGCTCATGAGTGTA
TGATGGGAGGGACATAGTTCCTGAGCCCTATTGTTCGAAGTCAGGCTGTG
GCCATTCCCTCAATGTCTTTTCTGTCTTCCTTTACCCAGTTGCAGCATTT
CTGTTCACTGTTTCCATCTGTTGTTCTATCATGCTTGCATATCTATATCT
ACAGTTTGTTCTTGGCAATTGCAGCTGGAAACTTTAGTGGCTTCCAATGA
TGGAGTCAGGATGGATGGGTGATGGGTACAAACATGGTGAGCCTTATACA
CCAGGTTTTGTAACCACTTCATAAATGGTGATTTGATGGCCACTGACATC
CTGGCATGATAAAAATGCTATCTTCAGTGTATTCTTAAAGAGTTTGCTCC
TCGCGTTAGCATGGTCATTTGGTGTCTCTGCATAGATTTCTATAGCAAAA
GCCACCATTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_m24.g1 MSMg01no121_m24.g1 CHROMAT_FILE:
MSMg01no121_m24.g1 PHD_FILE: MSMg01no121_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:43 2005
         (506 letters)



>mm_chr8_75801450_75802355
          Length = 906

 Score =  899 bits (465), Expect = 0.0
 Identities = 495/505 (98%), Gaps = 1/505 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcccagcaaccacgtggtgcctcacaaccatctgtaatgaaatccgatagccccttc 60
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 831 aattcccagcaaccacatggtgcctcacaaccatctgtaatgaaatctgatagccccttc 772

                                                                       
Query: 61  tggtgtgtctgaagagaacaacagtgtactcacataaaataaatgaataaaatcttgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tggtgtgtctgaagagaacaacagtgtactcacataaaataaatgaataaaatcttgaaa 712

                                                                       
Query: 121 aaaaaagggggggaaaggtctatatgcctactagacaacattggatacctctgcattcaa 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aaaaaa-ggggggaaaggtctatatgcctactagacaacattggatacctctgcattcaa 653

                                                                       
Query: 181 tatcctggatggaatgtctatctgcccttagcactggggctcatgagtgtatgatgggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tatcctggatggaatgtctatctgcccttagcactggggctcatgagtgtatgatgggag 593

                                                                       
Query: 241 ggacatagttcctgagccctattgttcgaagtcaggctgtggccattccctcaatgtctt 300
           |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 592 ggacatagttcctgagccctattgttcgtagtcaggctctggccattccctcaatgtctt 533

                                                                       
Query: 301 ttctgtcttcctttacccagttgcagcatttctgttcactgtttccatctgttgttctat 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 532 ttctgtcttcctttacccagttgcagcatttctgttcactgtgtccatctgttgttctat 473

                                                                       
Query: 361 catgcttgcatatctatatctacagtttgttcttggcaattgcagctggaaactttagtg 420
           | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 472 cttgcttgcatatctatatctacagtttgtttttggcaattgcagctggaaactttagtg 413

                                                                       
Query: 421 gcttccaatgatggagtcaggatggatgggtgatgggtacaaacatggtgagccttatac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 412 gcttccaatgatggagtcaggatggatgggtgatgggtacaaacatggtgaaccttatac 353

                                    
Query: 481 accaggttttgtaaccacttcataa 505
           | |||||||||||||||||||||||
Sbjct: 352 atcaggttttgtaaccacttcataa 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)