BAC Information

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BAC

Clone NameMSMg01-121O10
Chromosome8 (Build37)
Map Location 75,540,306 - 75,540,597
singlet/doubletsinglet
Overlap geneLarge
Upstream geneLOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3
Downstream geneLOC100039001, LOC666134, Crry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121O10.T7 (MSMg01no121_o10.b1)MSMg01-121O10.TJ (MSMg01no121_o10.g1)
ACCAG331897AG331898
length710703
length of high quality
(start - end)
292 (70 - 361)294 (73 - 366)
definitionCHROMAT_FILE: MSMg01no121_o10.b1 PHD_FILE: MSMg01no121_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:50 2005CHROMAT_FILE: MSMg01no121_o10.g1 PHD_FILE: MSMg01no121_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGTTGTTTCTTCCTACTTTGCTTGGAATATTCTGTGTAAAATGC
CTTTCTAGACTCCCTAAGTTGCCCTTACCCCCCACCTCCAAGTGTTACAA
ACCTTCCTTTCCAAAACAGTGTCATCAGCACACTATTAAGATGCCTCACA
CATTCTGGCAGTGTGCGCCTGCCACTAGATAGATTGTGAGCTCCTTTTCT
ATAGTCCATGTGACCAGAAGAGCCAGCAAGATCTTGTTTGGCTGATTTTA
ACTTAAAAGAGCAGGGGTGTATTTTTCAGTCAAGCACAGTGGCTGGTGCC
AAGGAGTGCTGTATGTGCCACCCCCCGCTCTTTCCAAATGAGTGAATTCT
TGATCTCAGTATTGCCAACATTTTGTATAATACTCAGCATGGGCATAGTT
GGGGTCGATGTGGTTCATTTCTCTGTTTTAAAAACCATTGCACTGCAGCA
AAGATTAGACAGTCTACCTTTAAAAATGCTATTGTTTTCCTTTTCATTTT
CTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCATCCCTGCCCAA
TCCCTCTCTCCATGTGTGTGCCTAATAAAGAGCAAGTTACCTGACTTGTT
ATGTTCTCCCACTCTTCACCTTATGCCCTCAAGACAGGGTCTGTCCAGTG
AAACTGGACT
CGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCATTAA
TGGGTGTTGGATTTTGTCAAATGCTTTCTCAGCATCTAATGAGACGGTAT
GTGGTTTTTGTCTTTGAGTTTGTTTATATAGAGGATTACGTTGATGGATT
TTCGTATATTAAAACATCCCTGCATCCCTGGAATGAAACCTACTTGGTTG
GGATGGATGATTGTTTTGATGTGTTCCTGGATTTCGTTAGCGAGAATTTT
ATTGAGTAATTTTGTTTCGATATTCATAAGGGAAATTGGTCTGAAGTTCT
CTATCTTTGTTGGATCTTTCTGTGGCTTAGGTATCAGAGTAATTGTGGCT
GGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATTACTGCTTCTATTTC
TTTAGGGGATATAGGACTGTTTAGATCATTAACCTGATCCTGATTTAACT
TTGGAACCTGGTATCTGTCTAGAAATTTGTCCATTTCGTCCAGGTTTTCC
AGTTTTGTTGAGTATAGCCTTTTGTACAATGATCTGACGGTCTTTTCGGA
TTTCTTCCCACCCAGTTGGTAAGAATCCCTTTTCACTTCTGACTATCTTA
TACTTATAATCAGTAACATGACTCCTCTACTTACCTCGGTTACGATCTTA
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_o10.b1 MSMg01no121_o10.b1 CHROMAT_FILE:
MSMg01no121_o10.b1 PHD_FILE: MSMg01no121_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:50 2005
         (292 letters)



>mm_chr8_75540106_75540797
          Length = 692

 Score =  482 bits (249), Expect = e-140
 Identities = 281/297 (94%), Gaps = 10/297 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactttgcttggaatattctgtgtaaaatgcctttctagactccctaagttgcccttacc 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||   |||||
Sbjct: 492 tactttgcttggaatattctgtgtaaaatgcttttctagactccctaagttgtttttacc 433

                                                                       
Query: 61  ccccacctccaagtgttacaaaccttcctttccaaaacagtgtcatcagcacactattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ccccacctccaagtgttacaaaccttcctttccaaaacagtgtcatcagcacactattaa 373

                                                                       
Query: 121 gatgcctcacacattctggcagtgtgcgcctgccactagatagattgtgagctccttttc 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 372 gatgcctcacacattctggcagtgtgcgcctgccactaaatagattgtgagctccttttc 313

                                                                       
Query: 181 tatagtccatgtgaccagaagagccagcaagatcttgtttggctgattttaacttaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 312 tatagtccatgtgaccagaagagccagcaagatcttgtttggctgatcttaacttaaaag 253

                                                                    
Query: 241 agcaggggtgtatttttcag-----tcaagcacagtggctggtgccaaggagtgctg 292
           ||||||||||||     |||     ||||||||||||||||||||||||||||||||
Sbjct: 252 agcaggggtgta-----cagcacagtcaagcacagtggctggtgccaaggagtgctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)