BAC Information

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BAC

Clone NameMSMg01-122A04
Chromosome8 (Build37)
Map Location 30,753,930 - 30,754,348
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc5d, LOC100041237
Downstream geneEG628189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122A04.T7 (MSMg01no122_a04.b1)MSMg01-122A04.TJ (MSMg01no122_a04.g1)
ACCAG331981AG331982
length9811,062
length of high quality
(start - end)		758 (45 - 802)760 (76 - 835)
definitionCHROMAT_FILE: MSMg01no122_a04.b1 PHD_FILE: MSMg01no122_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:59 2005CHROMAT_FILE: MSMg01no122_a04.g1 PHD_FILE: MSMg01no122_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:59 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTTTTTGCAGTCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTTCAATAGGGAAGCTTAAAATGCTGGCAATACTTAACTATACA
ATACATATTCCACAGAAATGTGACATGGAATACTACACTAAAAAGAAGTG
TCTAATATACTCTACAGAGGCGTCAAGCTGCCCTTTGAGTGATGATTTGG
GATGAGCTCCTCCCATGGCATGATTTTCACCTTCAACTGCACAGATAACT
TTTTTTAAACAATTTTTTATTAGATATTTTCTTCATTTACATTTCAATTG
CTATCCTGAAAGTCCCGTATACCTCCCCGCCCTGCTCCCCAAGCCACCCA
CTCCTGCTTCCTGGCTCTGGCATTCCCCTGTACTGGGGCATATAAAGTTT
GCTAGACCAAGGGACTCTCTTCCCAATGATGGGCAACTAAGCCATCTTCT
GCTACATATGCAGCTAGAGACATGAGCTCTGGGGGGTACTGGTTAGTTCA
TATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTCAGCTCCTTGGGTGC
TTTCTCTAGCTTCTCCATTGGGGGCCCTGTGTTCCATCCGATAGAAGATT
ATGAGCATCCATTTTTGTATTTGCCAGGCACTGGCATAGCCTCACAAGAG
ACAGTTATATCAAGGTCCTGTCAGCAAAACCTGGGCTGTACCTGTATTTT
AATTTCTGAATCAGAGCTGAATTACAACACTAGAATGTTTATATTGCAAA
TTTCATGTTTTTTGTCTGTAACTCACTAAATGAGGAACAATGTCACAGCA
TGGCTAATTACCCAGAAATTCAATGTTTGAATTTATAAATATATTTATCT
TACATTAATTCAAGTTAAGAAATTTTGTTGCAAAATGGGCTTAAATTTAA
GAAAAAATTTAAGGAATTTTTTCAAGAAAGGGAAAGAATTTATCCTTTAA
AAAAATAATCCTAATGGGGCCAAGGTTAAAA

TTTTNGCCGACGGTAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTTCATCTTTATGTCCTCTACCATCATCATG
AGATATGCCTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCC
TGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCT
GGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCT
CTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTG
ATTTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGA
GTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGA
AGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGG
CCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTG
GCCAGTTGTCTGGAGTCGAAGATGTTGCAGCCTCAGAAGCTCTGTGGCTC
TTGCCGGGAAAGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCCGCCCCAG
AATCTCTGCGACTCTCTCGCCCGTCCCAGAAACGGCTGGCACTCTGTATT
CCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCTGGAGCCAAGA
AGGCTCCCGCCGGCGCCTGTGCCACAAACCTCTCAGGCCAGGCAGACCCC
GTGCTCTCACCAGGAAGGTGGCCGGCTGTCTGGAGCTAAAGATGGCGCCG
CCCAGAAGCTCTGCGACTCTCACGCCCGTCCCAGAAACAGCTGGCACTCT
GTATTCACACGGTCACCCGTGCAGCCTGCCCTCCGTGGAGTCCCGGAGCC
AAGAAAGCTCCTGCCGCCGCCTGTGCCCCAAACCTCTTCAGGCCAGGCAA
ACCCCCGTGGTTCTCCCCAGGAAAGGTGGCCCGGCTGTTCTGGAACTTGA
AAATAGGTCGCCCCCCCAAAAAAGTTTTTGGGAATTTTTCAAGGCCCCGT
TTCTCCAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_a04.b1 MSMg01no122_a04.b1 CHROMAT_FILE:
MSMg01no122_a04.b1 PHD_FILE: MSMg01no122_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:59 2005
         (758 letters)



>mm_chr8_30753930_30755088
          Length = 1159

 Score =  787 bits (407), Expect = 0.0
 Identities = 416/419 (99%), Gaps = 1/419 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttttc-aatagggaagcttaaaatgctggcaatacttaactatacaatacat 62
           ||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 419 ggaattctttttcaaatagggaagctcagaatgctggcaatacttaactatacaatacat 360

                                                                       
Query: 63  attccacagaaatgtgacatggaatactacactaaaaagaagtgtctaatatactctaca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 attccacagaaatgtgacatggaatactacactaaaaagaagtgtctaatatactctaca 300

                                                                       
Query: 123 gaggcgtcaagctgccctttgagtgatgatttgggatgagctcctcccatggcatgattt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gaggcgtcaagctgccctttgagtgatgatttgggatgagctcctcccatggcatgattt 240

                                                                       
Query: 183 tcaccttcaactgcacagataactttttttaaacaattttttattagatattttcttcat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tcaccttcaactgcacagataactttttttaaacaattttttattagatattttcttcat 180

                                                                       
Query: 243 ttacatttcaattgctatcctgaaagtcccgtatacctccccgccctgctccccaagcca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ttacatttcaattgctatcctgaaagtcccgtatacctccccgccctgctccccaagcca 120

                                                                       
Query: 303 cccactcctgcttcctggctctggcattcccctgtactggggcatataaagtttgctaga 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 cccactcctgcttcctggctctggcattcccctgtactggggcatataaagtttgctaga 60

                                                                      
Query: 363 ccaagggactctcttcccaatgatgggcaactaagccatcttctgctacatatgcagct 421
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  ccaagggactctcttcccaatgatgggcaactaagccatcttctgctacatatgcagct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 758
Length of database: 1159
Length adjustment: 10
Effective length of query: 748
Effective length of database: 1149
Effective search space:   859452
Effective search space used:   859452
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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