BAC Information

Click to search

BAC

Clone NameMSMg01-122C06
Chromosome8 (Build37)
Map Location 44,696,753 - 44,697,505
singlet/doubletsinglet
Overlap genenone
Upstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a
Downstream geneEG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122C06.T7 (MSMg01no122_c06.b1)MSMg01-122C06.TJ (MSMg01no122_c06.g1)
ACCAG332078AG332079
length1,0661,084
length of high quality
(start - end)		765 (82 - 846)755 (83 - 837)
definitionCHROMAT_FILE: MSMg01no122_c06.b1 PHD_FILE: MSMg01no122_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:17 2005CHROMAT_FILE: MSMg01no122_c06.g1 PHD_FILE: MSMg01no122_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTTTNNNNNATCAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCC
GCGGAATTCTTTTGATTGATATCTGCTATAGAACTTGATAAAAAAACTGT
ATTTATTATGGTGGGCTATGTCCATTGTATCTCTAGCATCTCTGGGACTT
TTATCATAAAGAATTTATTATAAGTGAAATTTGTCAGAGGCCTTTTCTGT
ATCTAATCATATGATCATGTAACTTTTCTGATTATTTATGCATTTGATTG
TATTTATTTAGCATATATATATATATATTAAACATCCCAGCATATCTGGA
AGGAAGCCTACTTGATAGTGGTGGATCACCTTTTTTTGTTTGTAAATATT
TTATTGAGAAGTTTTACATCTATGTTCATAATGGAAACTATTCATAGTTT
TCTTTCTTTGTTAGGATTTTTATGTGGTTTAATCATCAGGTTAATTTTGA
CCTTGTAGCAAGTATTGGGAATTCTCCTTTTTCTATTTTGTGAAATAATT
TTAAGAGTATTGGCACTGATTCTTCTTTGAAAAATCTTGGAGAATTCTAT
GTTAAAACCATCTTGTCCCGGGCTTTTATTGTGGGGGTAGTGGACTAATA
ATCATGGCTTCTATTTCACTGGAAGTTATTGGTCTCTTTAAATTACTTTT
CTCATTTTGATTTAACTTTAGTAAGTGGTATATATCAAGAAAAATTATTC
ATTAATTTTGGATTTTCCAGTTTGATGGAGTACATATCTTTGAAGTATGT
CCTTATGATTCTCTAGGTTTCTTCAGTGACTTTCACTTGCCACTCCTTTT
CATCTCTAATTCTGTTAATTTGGATATTCTCCCTGTGACTTTTAGCTAAA
TTGGCTAAGGGTTTGTCAATCTTATTGATTTTCTGAAGGAAATAACCCTT
TGCTTCATTGACTCTTTGTACTGGTTTTGGTTTGTTTTTATTGAATTGAT
TTAGCCCTGGGTATTTTCTGGCCCCCAAACTCCTTTTGAAACCAAATTCC
TTCCTTTTGGTTCCAAAAAGGTTTCCCGTTTATGTATTGTGACTTTACTT
TGCCCCTATTTAAACC

CCTTTTTTTTNNNATACATTGGTAGCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAATACTAGGCATTTCCTAG
TTGAAAACTGGGTAATGAACTATTCTTTAGTTTACATGCTGTTTGAAAAT
TGTGCTCTTGCTTTGGTTATGATGTTTTCTCATATAAAAGAAAATTTAAA
AAAGACATAAGAAAACTGCAAAGAATCTATTGACAAACCAGTTATGGTGT
CTATAGTTTTGATTGTGGTTGTTCTAACAGGAGGTATCTCATGGTCAACA
CTACCTCTATTATGGTTAGCAGGTATTGATATGGGTGACCATCTTGTCTG
TGACAAAACATGATGAAAACCGACTTGGGGAGGAAAGGGTGCACTTTATT
TTGCAGCTTCCAGACCTGAATTCAGAATGTCAGTTAGGAACTCAAAGCAA
GAACTCAGATTTTATTTTTTATTAGATATTTTCTTTATTTACATTTCAAA
TACTATCCCAAAAGTTCCCTATACCCTCCCCCCCCCAGTTCCCTACCCAC
CCATTCCCATTTTTTTGGCCCTCGTGTACCCCTGTACTGGGGCATATAAA
GTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCCGACTAGGCCAT
CTTTTGATATATATGCAGCTAGAGACAAGAGCTCCGGGGTACTGGTTAGT
TCATATTGTTGTTCCACCTACAGGGTTGCAGATCCCTTTAGCTCCTTGGG
TGCTTTCTATAGCTCTTCCATTGTCGGCCCTGTGATCCATCCAATAGCTG
ACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCAGCATTGTCTCACAA
GAGACAACTATATCAGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAA
TGGTGTCAGCATTTGAAGGCTGATTATGGGATGGATCCCTGGATATGGCA
ATCTCCAAGAGGGGTCCGTGAATATTGGGGTTTGTTTGCTTGGTTTGTTT
TGTTTGGTTTGGTTTTAAGCCCAACCTTTCCCTTAAAGCTTGGAAGCCCT
TCTTTAAAACCCTTCCTTTTCCCTCTAAATTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_c06.g1 MSMg01no122_c06.g1 CHROMAT_FILE:
MSMg01no122_c06.g1 PHD_FILE: MSMg01no122_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:17 2005
         (755 letters)



>mm_chr8_44696553_44697707
          Length = 1155

 Score = 1386 bits (717), Expect = 0.0
 Identities = 745/755 (98%), Gaps = 2/755 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atactaggcatttcctagttgaaaactgggtaatgaactattctttagtttacatgctgt 60
           ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 201 atactaggcatttcctagttgaaaattgggtaataaactattctttagtttacatgctgt 260

                                                                       
Query: 61  ttgaaaattgtgctcttgctttggttatgatgttttctcatataaaagaaaatttaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaaaattgtgctcttgctttggttatgatgttttctcatataaaagaaaatttaaaaa 320

                                                                       
Query: 121 agacataagaaaactgcaaagaatctattgacaaaccagttatggtgtctatagttttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacataagaaaactgcaaagaatctattgacaaaccagttatggtgtctatagttttga 380

                                                                       
Query: 181 ttgtggttgttctaacaggaggtatctcatggtcaacactacctctattatggttagcag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ttgtggttgttctaacaggaggtatctcatggtcaacactacctctattatggttatcag 440

                                                                       
Query: 241 gtattgatatgggtgaccatcttgtctgtgacaaaacatgatgaaaaccgacttggggag 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtattgatatgggtgaccaccttgtctgtgacaaaacatgatgaaaaccgacttggggag 500

                                                                       
Query: 301 gaaagggtgcactttattttgcagcttccagacctgaattcagaatgtcagttaggaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaagggtgcactttattttgcagcttccagacctgaattcagaatgtcagttaggaact 560

                                                                       
Query: 361 caaagcaagaactcagattttattttttattagatattttctttatttacatttcaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaagcaagaactcagattttattttttattagatattttctttatttacatttcaaata 620

                                                                       
Query: 421 ctatcccaaaagttccctataccctcccccccccagttccctacccacccattcccattt 480
           |||| ||||||||||||||||| ||||||||| |  ||||||||||||||||||||||||
Sbjct: 621 ctattccaaaagttccctatacactcccccccac--ttccctacccacccattcccattt 678

                                                                       
Query: 481 ttttggccctcgtgtacccctgtactggggcatataaagtttgcaagtccaatgggcctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttttggccctcgtgtacccctgtactggggcatataaagtttgcaagtccaatgggcctc 738

                                                                       
Query: 541 tctttgcagtgatggccgactaggccatcttttgatatatatgcagctagagacaagagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tctttgcagtgatggccgactaggccatcttttgatatatatgcagctagagacaagagc 798

                                                                       
Query: 601 tccggggtactggttagttcatattgttgttccacctacagggttgcagatccctttagc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tccggggtactggttagttcatattgttgttccacctacagggttgcagatccctttagc 858

                                                                       
Query: 661 tccttgggtgctttctatagctcttccattgtcggccctgtgatccatccaatagctgac 720
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 859 tccttgggtgctttctatagctcttccattgacggccctgtgatccatccaatagctgac 918

                                              
Query: 721 tgtgagcatccacttctgtgtttgctaggccccag 755
           |||||||||||||||||||||||||||||||||||
Sbjct: 919 tgtgagcatccacttctgtgtttgctaggccccag 953


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 755
Length of database: 1155
Length adjustment: 10
Effective length of query: 745
Effective length of database: 1145
Effective search space:   853025
Effective search space used:   853025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |