Query= MSMg01no122_f24.b1 MSMg01no122_f24.b1 CHROMAT_FILE:
MSMg01no122_f24.b1 PHD_FILE: MSMg01no122_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:45 2005
(650 letters)
>mm_chr8_101612976_101614025
Length = 1050
Score = 953 bits (493), Expect = 0.0
Identities = 510/517 (98%), Gaps = 4/517 (0%)
Strand = Plus / Minus
Query: 1 ggattatttgttctatggtatcaaaaattcccat--tctggtctacagaatcctatgatt 58
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 515 ggattatttgttctatggtatcaaaaatt--cataagctggtctacagaatcctatgatt 458
Query: 59 tagagtggggtgctccacattctaaattctgtatttaatttgtgaacttatccttacatt 118
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tagagtggggtgttccacattctaaattctgtatttaatttgtgaacttatccttacatt 398
Query: 119 aaaaaaaagtattttcattggctttctcatattcatcttaaggaaacatttggctggtca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaaaaaaagtattttcattggctttctcatattcatcttaaggaaacatttggctggtca 338
Query: 179 gagtggtgctatcaatatataatcatagacagtggattctccacctaatttcacactgat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gagtggtgctatcaatatataatcatagacagtggattctccacctaatttcacactgat 278
Query: 239 gcttgtaatacgagaaagtctagttgagaaatgttgatgcacactgttaaacgcaaggcc 298
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gcttgtaatatgagaaagtctagttgagaaatgttgatgcacactgttaaacgcaaggcc 218
Query: 299 aaagcatgttggtgaaatgtcatagttgatatttaatctcaaactggggtatctactttg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aaagcatgttggtgaaatgtcatagttgatatttaatctcaaactggggtatctactttg 158
Query: 359 cctttgataattcagtttccagttaaaaaagaacacacaccattcatactcataatagcc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 cctttgataattcagtttccagttaaaaaagaacacacaccattcatactcataatagcc 98
Query: 419 cttaatcagcactaaagctgggcagatatctactccgtcagctattatgtctatttctct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 cttaatcagcactaaagctgggcagatatctactccgtcagctattatgtctatttctct 38
Query: 479 cacactatccctactatatgacttgccatgttccatc 515
|||||||||||||||||||||||||||||||||||||
Sbjct: 37 cacactatccctactatatgacttgccatgttccatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_f24.g1 MSMg01no122_f24.g1 CHROMAT_FILE:
MSMg01no122_f24.g1 PHD_FILE: MSMg01no122_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:45 2005
(514 letters)
>mm_chr8_101455885_101456798
Length = 914
Score = 963 bits (498), Expect = 0.0
Identities = 510/514 (99%)
Strand = Plus / Plus
Query: 1 tttgactctgtggactatgtgtggtaatataggaacatgacatatgcagatgggtatgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgactctgtggactatgtgtggtaatataggaacatgacatatgcagatgggtatgtg 260
Query: 61 catataacagtactaaagatatatgtggttctacaaaccatccttctttcccccacagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catataacagtactaaagatatatgtggttctacaaaccatccttctttcccccacagcc 320
Query: 121 caagtatttctataccatattataatccagattgagtcagggttcttctcctatgctcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagtatttctataccatattataatccagattgagtcagggttcttctcctatgctcct 380
Query: 181 ttgatttcctgctaagtccattttctgctggtttatttgaatgctagtctttgcaaagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatttcctgctaagtccattttctgctggtttatttgaatgctagtctttgcaaagca 440
Query: 241 ccctagagatagtaagtatcttagctaaaatgttatcttctaactttaattctagatatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctagagatagtaagtatcttagctaaaatgttatcttctaactttaattctagatatc 500
Query: 301 ttccttcttaattatagatgaacaatctgataaacctagtttaaatatgtacacatattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccttcttaattatagatgaacaatctgataaacctagtttaaatatgtacacatattt 560
Query: 361 gagtaatattaacaatctattttgttacatttacatgtatatcaaaattatttcaagaaa 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 561 gagtaatattaacaatctattttgttccatttacatgtatatcaaaattatttgaagaaa 620
Query: 421 atgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 atgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctatgatcaaa 680
Query: 481 aacacaggtgacagcagatgctggcaaggatgta 514
|||||||||| |||||||||||||||||||||||
Sbjct: 681 aacacaggtggcagcagatgctggcaaggatgta 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
