BAC Information

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BAC

Clone NameMSMg01-123A16
Chromosome8 (Build37)
Map Location 94,105,449 - 94,105,822
singlet/doubletsinglet
Overlap geneAJ237917
Upstream geneLOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l
Downstream geneLOC100041254, LOC674324, LOC100040628, Irx3, 4933436C20Rik, Irx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123A16.T7 (MSMg01no123_a16.b1)MSMg01-123A16.TJ (MSMg01no123_a16.g1)
ACCAG332749AG332750
length1,2731,176
length of high quality
(start - end)
374 (85 - 458)334 (124 - 457)
definitionCHROMAT_FILE: MSMg01no123_a16.b1 PHD_FILE: MSMg01no123_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:12 2005CHROMAT_FILE: MSMg01no123_a16.g1 PHD_FILE: MSMg01no123_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCGACACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATTACAGAGAAGTACCCTTTTATTTCTAGCTTACTAAGCTTTATT
TCTGACTAATGCCCTTCCGAGATCCATATCCCTTCTTCCCTTATTTCAAC
AGATATTTTGAATATGAAAATCTTATGTCAAAACTTAGCTGAAGCCTCCA
TCGGGCTTTTGAAAGGCTAAGTAAGAATTCTGTTTCTAGGAATAAAAAGA
TTTGGATCAGAAAGAGCCTTTGCTGGAGAGAGTTCCTTCTCTGGATGGCG
GCTCAGGCGGTCTTTAATCAGATTTTTGTTGATTATTTATTAGTTTCCCC
CACAAAAATCAAAGACTTGGTAATATGAGATGTGTTTTTCCTAAGATATT
TTATGATTCAGACTCCACAATAAAGAAATAATGGAGATAAAATAAATTTT
GATGATATGCACTAATTGGCAAATCAAATATCTCTCTTGGTCAGTGGCCC
ACACAGAAATGACGAGCGATGCTACTGGCCCAGTTACACCAGTCACCCTC
TGCCTAGACAGAGCTCCTTAAGTCACTAGCAGATAAAGAGAGTGCTTTGT
CAGTCAGTCCAGCCGGTGGAGAAGGGGAACTAATTGAAGGATCAGGCTCC
TGGCTAGCTGCTCTGTGAACCCACCCTGCACCAGAGTGAGGACTAATTCC
AGTCACCAGTCTTGAGCTTGTGTGATGCAGACCATATCCCTTGTCACTGT
GAGCCGTGGAAAGCATCCCCACTGTCCTCAGCTGTGGGGCCCCCAGGCTA
GCTAAGTTAGGTTTAATGCTGGGCTTGTCTAGAAAATTTCCACCTCGCTT
CCTGTTGGTGTTCGAGGAGGTACTGCCAATAGTGTTCCCTTTTTATACAC
TCTCCTGATCTTTTGCTATTATTATGTACCCTTATAATCCTGTTGTCTAT
ATTCCCTTAAATCACAATTCTATTCTTCACGCCTTTGTTCGTCTTTTTCG
TTTACTTCAATGGTATCCTTGTTCTTATCTCCTCTTTTCTCTACTTGTCT
TTTTCTTTTCCTATATCCCTTATCTTTTCTCTTTTTTCTGCCCGTTATAC
TATTCCTACTTTTTTTCTCTATCTTCTTCTCCGTTCTAGATCTTCTTTCA
TTTTTTCTCTTTTCTCCGTTCTTCTTTCTTATCTTTGCCCCTTCCGNCCT
TATACTTTCCCCCTCTCCCTTCCTCTTAGCCTTCTTCCTTATCTCTCTTT
TACTTCTCTATCTCATCATTTTA
TTCTCACTGCATGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCTATAACTCTTCAGCTGGGGAACGGTGGTA
ATAAAGTGTTCCTTCAACACAGACTGTTGAGAAGGATTCAACTGCGTGAA
TTCAGAACTCTTCAGCTGGGGAACAGGGTACCCGTAAGTATAGCTTTACA
AGGTAAGTCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAG
AAGTAAAGTGGGAAATAGCTTTACAAGGTAAGTCTGGTCTTGAACTTTCT
AACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTACA
AGGTATGTTTGGCCTTGAACTTTTTCTAGTGTTAGGAGCCCTTTTGTTCC
TTTTCACATGTTATCAAGCGGTTAAGGCAGGGCTGAAAATTCTGGATGAA
ATTCATGTTAATCTATCACAAGTAAAGCGGGGAGAGAGAGTAGGAGCAAA
GAGGAAATATGGTTCACAAAATAAGTATACAGGCCTTTCCACGGGTCTTG
AACCTGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATTAGA
AGGAAGGAAAAGAAAAAAGATCAATTAGCGGAGGTCTCTAGGAGAAGGAG
CCTATACTCATCACTAGATGAGCTCACGGAGCCCGTTCTTAATAGTTCTG
AATCAGATGAGAAGGCTATTAGGGCCCTGTAAGGCGCTCTCCCGAGCAGG
TGAAGCCCCTGGACAACTTACAAAGATCGTCCCGAGACCTCAGGAGTCAT
TTTCATATTTTTGTGGCCAGAATGACCGTAGCCAGCTAAACGTATTTTTG
GAGAATTCATAAGCAAGCCGCTCCCTTTGTGTAAAATATCTTATTTTATG
AATCATGCCTCACGTTGGAAATTCCATAATCGGCCATTTGCCCCCTGGAA
AAGAAACAAAAGGTTTTTACTAAAACTGGGCTTTATTGTTTTTTGCCCTC
TGAACCTTTGGTGTGGATACCCTCCCCATTTATTGCGCATTACCTTCCCC
CTTCCTCTCAATCAATAAACAAATTTCTTCTAGGGGCCCCCCTTCAATTT
TGTTCCATAAAAATACCTTCTTTTCTTTCCACCAATTTAGTGTTTTACTC
CAAACAATGTGGATACTGGGCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_a16.b1 MSMg01no123_a16.b1 CHROMAT_FILE:
MSMg01no123_a16.b1 PHD_FILE: MSMg01no123_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:12 2005
         (374 letters)



>mm_chr8_94105249_94106022
          Length = 774

 Score =  696 bits (360), Expect = 0.0
 Identities = 371/376 (98%), Gaps = 4/376 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttactaagctttatttctgactaatgc--ccttccgagatccatatcccttcttccctt 58
           ||||||||||||||||||||||||||||  |  |||||||||||||||||||||||||||
Sbjct: 201 cttactaagctttatttctgactaatgcagc--tccgagatccatatcccttcttccctt 258

                                                                       
Query: 59  atttcaacagatattttgaatatgaaaatcttatgtcaaaacttagctgaagcctccatc 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atttcaacagatattttgaatatgaaaatcttatgtcaaaacttagctgaagcctccatc 318

                                                                       
Query: 119 gggcttttgaaaggctaagtaagaattctgtttctaggaataaaaagatttggatcagaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gggcttttgaaaggctaagtaagaattctgtttctaggaataaaaagatttggatcagaa 378

                                                                       
Query: 179 agagcctttgctggagagagttccttctctggatggcggctcaggcggtctttaatcaga 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agagcctttgctggagagagttccttctctggatggcggctcaggcggtctttaatcaga 438

                                                                       
Query: 239 tttttgttgattatttattagtttcccccacaaaaatcaaagacttggtaatatgagatg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tttttgttgattatttattagtttcccccacaaaaatcaaagacttggtaatatgagatg 498

                                                                       
Query: 299 tgtttttcctaagatattttatgattcagactccacaataaagaaataatggagataaaa 358
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 499 tgtttttcctaagatattttatgaatcagactccacaataaagaaataatggagataaaa 558

                           
Query: 359 taaattttgatgatat 374
           ||||||||||||||||
Sbjct: 559 taaattttgatgatat 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)