BAC Information

Click to search

BAC

Clone NameMSMg01-123G08
Chromosome8 (Build37)
Map Location 110,075,101 - 110,075,267
singlet/doubletsinglet
Overlap geneWwp2
Upstream geneCdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, LOC100042812
Downstream genePsmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123G08.T7 (MSMg01no123_g08.b1)MSMg01-123G08.TJ (MSMg01no123_g08.g1)
ACCAG333008AG333009
length1,3261,339
length of high quality
(start - end)
167 (133 - 299)318 (106 - 423)
definitionCHROMAT_FILE: MSMg01no123_g08.b1 PHD_FILE: MSMg01no123_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:04 2005CHROMAT_FILE: MSMg01no123_g08.g1 PHD_FILE: MSMg01no123_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATTTTTNNNGGCATTGGGGCTAAGACTCCTAAGGGAGAGGATCCGCGG
AATTCGGGTCCTTCAGAGCCCCATTATAAACCCTTGGGGAACAATCGGGT
AATCGTAGTCAGCCTTTACAGCCCCTGGCTGCTGGGCTTTGCGGCTGTGT
AGATGGAGTCCTTCGATGCAGAGGGTGCTCCAGTACCCTGTCCGTGGTTC
TACCCTGTGGTAGAACAGCATGACGTATCCTACCATAGGGTAAAACCACT
GGCAGGACACAGAGAGAGACACACAGGGCGGGAGCCACACCAGATGCCCA
CCAAGCACAGCCTGGAGAGGTCACACCGAAAATAGAACAACTCATCTGCA
GGATGGGATGAACACAGAAGACTACACCACCAGCAAGCAGGGTCAACACA
GATTATTTTTTCACCAGCAAGCAGGGTCAGAGGCTGGGTAGTCCAACTAA
GTGAGATTTTTTTTCCCCCCCCCCAGGTCAGCAGGATGCCCCCCCACAAA
AGGGGAGAAGCCCCTTCCCACTGCTAGGACTCTCTGCCTGTTGTCCACGG
CTATGCTTTTCCAAAGAGCCTGTTAACTTTTGTAGGCTGAAGGTAACACA
GTGCTCTGGCTTCTTTTAGGGTTTATACCACCTGTTTTAATGTTATTGAC
TGGTACACAGGACATGCTCCATGAGTGTCTATGCTTAGACATACCCTATG
TGTTCTGAGATATCTGACTTATCCTGCTCTGCTTGCCTCATTTACATATG
TATCCTTCCGCTTGATTTTATGGTACCCCTTGCTGACCTTACATTCTTGC
CTTCGTCCATTGATTCTATGCTCATCTTTTTTTTATCTTTATTAAATTCG
TCTTGCCTTCTGTTATATAACCTCTCCTCTTGTCCCCCTTCCCTAGTAAT
CTCTTGCTTTCCTCTTTTTTTCATTTTGTATCTCTTCTCCATTTTCTTTC
CCCTCATTTGCTACCTTTACTGCTTCTACCTCTACATTTCTTTCCACCTC
CTCTTTCTTTCCTTCTCTTTCTTATCTCTTCCCCTCCATATCTTTTCTTT
CTTTTTTTACTTCATTTTTTTTTCCTTTAACACTCCCCGACACCCCTCAC
TTTTCGTCTTTCGTCCTTCTTCTTCTTCGTTCTTCCCTCTGTCCTGATCT
CTTCCTTCTCCCTCATCTCTTTTCTTCACCCTACCTCTTCCTCTTCTCTT
CAACTCTCTCCTCTCCTTTCCTCTCCTTTTTTATTTAACTTCTCTCCTTT
CATTCTTTTTTCCTTGCTTTCTCTCTCCTCCTCGTCTTTCCTGTCTCCTT
CTCTCTCTTTCTACTTCCTACCTTTC
NGAAATATAAATTNNTCAGCATGGTAGGCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTTTCATTCCCAGA
TGAGCTCTAGCTTGGTGTCAGGTTGACCCCTTAAAAAAAAAAAAAAAAAA
AAAAACTAACTGGCACACAGATTTTAAAACAACAACATTTGGAGTGTATT
AACCCTATTATCCACCAACCTAAGGGCTACAACAGCATTGGAGGCCTATA
GTTGAGATTTCTCTGCCTGGCTGCAACCCACCTCTTGTGTCCCACCAGGG
AATTTTTAAAGATTCCTCGCTCTATAACGTTGTTCTGTTACCACAAAAAC
GTTATAACTTGATGAAAGTGTGTTGAAACAGGAAGTTTGAAATACCCTTA
TTCCATAGTCACTCAAATTTGACTCTAAAAGAAACTTGAGGAAGGGCTGG
TTTTTGTGCAAACCTCTTTTCAAATTTACCCTGCCCTCAAGTATTGAAGA
GCCTTACAGAGCAAACAGTCAGCGGGTCTCCTAACAACTCCAGATCTCCC
CCAGTTGCACTACTNCACACCCATCTCTGTAGGAAATTACGTGTGTAGCA
CTAACTAGTAAATTCCTTACATCCTACACGTGTTGCCAAGATCCTCCTCT
TTGCGTGTCAACTCAGCTGACTTATCAAACATGTCAAACATGACGTGAGG
TAATCCAGATGCTATTCTAGTCCCACCGTTGTCCATCCCCATCCCAAATA
GTTATTTCAAGATTTTTCTTCACTGAATAAAATGTATATCTCTTGCCCTT
CCAATTGACCAGATCAATGAACCTTTGCAGTTTTTTGTAATCTCCCCTAA
ATTCTGATTTCACTCCCAAAATTCTTGTTGAATCCTTAACCTTAGAATAT
TGGTCAAAACATATCTTGCTTCTCTTTTTACTGTTTGAAAAAAACAATCC
TTGAAATGTGTCAAATACACATCTCTCTTTTTTTTTGATATATGATAGCC
TTCACAATGACCCTCCTAATTATTTCTCTCCCTTTCAAACTAAATTCTTT
CATACTAACTTTTCTGGCTCTCAAAACTTTTCTATGGTTTCTTTTCTCTA
TATATAAATATACGCATAATATCCCTTCATATCCCTCTAACTATCTTTTC
TGTAACAAATTACATTTATATGATATTATAAACTCATTAATATACTCCCA
TCACATACTTTATTTTATCTCTTATATCATAATCTTCACTTTATAAAACT
CTCTCATCTCTCAATCTCGATATCATTCTATATGTAAACTCTTCTACTTT
CACTTCTAATCACCTATATATATACTTATATCTCTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_g08.b1 MSMg01no123_g08.b1 CHROMAT_FILE:
MSMg01no123_g08.b1 PHD_FILE: MSMg01no123_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:04 2005
         (167 letters)



>mm_chr8_110074901_110075467
          Length = 567

 Score =  308 bits (159), Expect = 2e-88
 Identities = 165/167 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggctttgcggctgtgtagatggagtccttcgatgcagagggtgctccagtaccctgtc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgggctttgtggctgtgtagatggagtccttcgatgcagagggtgctccagtaccctgtc 308

                                                                       
Query: 61  cgtggttctaccctgtggtagaacagcatgacgtatcctaccatagggtaaaaccactgg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 307 cgtggttctaccctgtggtagaacagcatgacgtaacctaccatagggtaaaaccactgg 248

                                                          
Query: 121 caggacacagagagagacacacagggcgggagccacaccagatgccc 167
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 caggacacagagagagacacacagggcgggagccacaccagatgccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)