BAC Information

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BAC

Clone NameMSMg01-124C06
Chromosome8 (Build37)
Map Location 74,630,774 - 74,631,357
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373
Downstream geneOlfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124C06.T7 (MSMg01no124_c06.b1)MSMg01-124C06.TJ (MSMg01no124_c06.g1)
ACCAG333570AG333571
length1,2561,246
length of high quality
(start - end)
338 (37 - 374)583 (124 - 706)
definitionCHROMAT_FILE: MSMg01no124_c06.b1 PHD_FILE: MSMg01no124_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:50 2005CHROMAT_FILE: MSMg01no124_c06.g1 PHD_FILE: MSMg01no124_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCCCCCGGCTCTCGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGC
AATTCACTTTACAGACCAAGCTAGTTGATCTTGAACTCACAGAGATCCAC
ATGTCTCTGTCTCCTGAATGCTGGGATTAAAGGTGTGCACTGCTGAAGTG
AAAACTTAAGGGTTCTTCAGAAAGTCTGTTGTATTGCATGGTGTTTCCAT
AACGTGGACTCGTGAAGGAACTTTTGGCTGAAGCAGACACAGGTGAAAGG
ATGTTCTGCTAAAGCAAGCAGTTAAAAGCACATATGATGAAGAATTCTTT
GATAATTACAAGCATCTATTGGTCTGCCTTAAAATGTATAGCTGAGCTTC
ATTTGTTTGGACTCCACAGAGAGAAACGCACCAAAAAAAAAAAAATTCTG
ATGGTTTTTTTCATGCTGCTTCCATGGTCTGATTGGCCGAGTGATGTCAA
CTTTTTTTTTTTCCCCCCCCGAGGCAAGACCCTTGCCCCCTCAAAAAAAA
GGGGAAGGGAGTATAAACACGACTCCACAGACAGTGATGGTGACTGGTCT
TGCTGGTAGAGCGTCCTGAGAAATGCTTGTTGGTCCCTTGTCTTTGCTGA
GCTTCACTTTGCTGAGAGAGGCACAGTGCAGAACTTCTCCTGGTGTCCCT
CCTGGTCTCTCCTTGGTCACTCACACAGAGGCCTGGTTGTCTCTGCTAGG
CTATGCCCCCCCTGCCCATCCATGTTTGCTATCCTGACTCCTCTGAACTG
CAACTGCTGTCGTATTCCTGATCTGTTTGCCAGTGTATCCATTCTGCCCT
TTGTTACTTGTGATCTGTACTGCTGATTTTCCAAACACCCTTTACGTTTG
TTTGCTCTTTATAACCATTTCCTCACCAGCTCCCCTTTCCCCTGTACCTC
CTTTTTACCTTTTCCTCCTGTGTCCCCATGTCATCACGCCAATCTTAATG
CTTTTTAATACCCCCCCTTTTCCACTGTCTCCTTGTCCCCCCTCCCTCCT
TCTCCTTTCATTTTCTTCTTCTTTCTCCTTCTCTCTTTCCCCCTTCTCCC
TCTTATCCACATTCCCCTTCCCCACCCCTCTCTTTTCTCCATTCCTTCCC
CCTCTTTTCTTTTATTCTCTTCCCTCTCTTCTCTTCTCTTACTCTCTTCT
CCAATTTTCCCTACTCTCTTATCTCTCCTCTTCCTCTCACCTTACTTCAT
TTCTTCTCTATCCTTCCCTTTTTTCTCCTTCTTCTCTTTTTAACTCCTTT
CTCTTT
TCCTCTTTAAACATTGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTTTAAGACCATGCTTTTCAAGGGATC
CCCAAAGAATCCCCCCTTAAGTGGCACCAAAGGTGTGGAGGGAAAACCTG
GGCAGGAAGTACAGTGCCCTTGGCCCCTAAGAAGCTGCCTTGATAGGGAC
AGAACACAGAACAATTAACCAGTTGATCCTAACAAGACCCTGGGGAACAA
GCCAGGCAATGAGGACAGAGGGTAAGCTGTGCTCTGCCAAGGCCTTGCAC
AGACTTTTGTAGGGACAGAAAACTGCCTCACGCGTCACACTCTGTCCAGG
AGCTTTTCCCAAGAAGAGCTGGCTTACCTCCCACCAAGCATCCCAAGGCC
AGAATCTTACCTTCCATAGGTGAGTAAAGTCGGGGGTTGGGGGGAGTAAG
GGGGCCACATCAGGCAGTGAGCCTGGAGGGTATAGCCAAGCCTACTGTGT
GACCTGGGACAAGTGGCTTTGCCTTTCTGGGTCTCACTTAAGTTGTGTCT
ATTTAAAAAAAAAAAAAAGATGCAAGAAAATGGGCAGTTCTGCCAAGTAG
TGAGTATCTGGGTCCTGCGTGTCAGGCTTGCTTCTGAAACAAGGTCGTAT
GTAGCCCTGGCTATTCTGGAGCTTGTCATCCTCCTGCTTCAGCTTTCTGA
GTGTTGGCGTGGCAGATGAGCCCACCATGCTCAGCTTGTATAGTATGGTA
TTAAGAGGTTTGGAACAAGACAGATTGTGAAGTATGGGGCCCTTGATAAT
TTCCTGAGTCCCCTTGTGTATGAATGGAAATAAAAGCCTTACCTGGAAAT
GCTGAGTGTGATGCACGGGGCCTCCACCCCCTCTTTTGTAAGGAGCTTCT
CATGGACCTTATCTATCCATCTATAATAGCAGCTTTCCCCGGACCCAGGG
CACAGGGAGCCAGTGCAAAATATTCTTACAGCCAGAAGTCGTTCCCTCTT
CCCTTGTTCAGGTCACCTTATTAAAATTAATCCTGGTACCCTGGGATTCC
CTGGAAGGGTCCAATCGTAAATGCCACTCGTATGGAGGTAACCCTGTGTT
TGGAATATCTCTTGTCGGTCTCTCCTCTATATCTAGGATGCTCTAGCTCC
GCCCCCCTTTTTAAGGTGTACTTCCCTTTCCCCAAAATCAAACGCTTTAC
GGTGGGGGTCCACTTATATATATCTGGTCCCTTCCCTCCCAAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_c06.g1 MSMg01no124_c06.g1 CHROMAT_FILE:
MSMg01no124_c06.g1 PHD_FILE: MSMg01no124_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:50 2005
         (583 letters)



>mm_chr8_74630574_74631556
          Length = 983

 Score = 1075 bits (556), Expect = 0.0
 Identities = 577/584 (98%), Gaps = 1/584 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaccaaaggtgtggagggaaaacctgggcaggaagtacagtgcccttggcccctaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaccaaaggtgtggagggaaaacctgggcaggaagtacagtgcccttggcccctaagaa 260

                                                                       
Query: 61  gctgccttgatagggacagaacacagaacaattaaccagttgatcctaacaagaccctgg 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctggcttgatagggacagaacacagaacaattaaccagttgatcctaacaagaccctgg 320

                                                                       
Query: 121 ggaacaagccaggcaatgaggacagagggtaagctgtgctctgccaaggccttgcacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaacaagccaggcaatgaggacagagggtaagctgtgctctgccaaggccttgcacaga 380

                                                                       
Query: 181 cttttgtagggacagaaaactgcctcacgcgtcacactctgtccaggagcttttcccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttgtagggacagaaaactgcctcacgcgtcacactctgtccaggagcttttcccaag 440

                                                                       
Query: 241 aagagctggcttacctcccaccaagcatcccaaggccagaatcttaccttccataggtga 300
           ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||
Sbjct: 441 aagagctggcttacctcccaccaagcatcccaaggccagaagcaaaccttccataggtga 500

                                                                       
Query: 301 gtaaagtcgggggttggggggagtaagggggccacatcaggcagtgagcctggagggtat 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 gtaaagtcgggggttggggggagtaagggggccacaccaggcagtgagcctggagggtat 560

                                                                       
Query: 361 agccaagcctactgtgtgacctgggacaagtggctttgcctttctgggtctcacttaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccaagcctactgtgtgacctgggacaagtggctttgcctttctgggtctcacttaagt 620

                                                                       
Query: 421 tgtgtctatttaaaaaaaaaaaaaa-gatgcaagaaaatgggcagttctgccaagtagtg 479
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgtctatttaaaaaaaaaaaaaaagatgcaagaaaatgggcagttctgccaagtagtg 680

                                                                       
Query: 480 agtatctgggtcctgcgtgtcaggcttgcttctgaaacaaggtcgtatgtagccctggct 539
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 agtatctgggtcctgcgtgtcagggttgcttctgaaacaaggtcgtatgtagccctggct 740

                                                       
Query: 540 attctggagcttgtcatcctcctgcttcagctttctgagtgttg 583
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attctggagcttgtcatcctcctgcttcagctttctgagtgttg 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)