BAC Information

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BAC

Clone NameMSMg01-124G14
Chromosome8 (Build37)
Map Location 28,779,569 - 28,780,133
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp703, Erlin2, Prosc, Gpr124, Brf2, Rab11fip1, Got1l1, Adrb3, Eif4ebp1, LOC732482, Tex24, Chrnb3, Chrna6, 4921537P18Rik, Gm1698
Downstream geneEG666422, LOC666430, EG666446, LOC100042598, Unc5d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124G14.T7 (MSMg01no124_g14.b1)MSMg01-124G14.TJ (MSMg01no124_g14.g1)
ACCAG333773AG333774
length1,2631,245
length of high quality
(start - end)
413 (42 - 454)679 (78 - 756)
definitionCHROMAT_FILE: MSMg01no124_g14.b1 PHD_FILE: MSMg01no124_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:28 2005CHROMAT_FILE: MSMg01no124_g14.g1 PHD_FILE: MSMg01no124_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGAGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGATTTGATTTAAGTAATCTTAGGAAGGAAGCTTTAAGAGATGGTTTT
AATTGTTTTGCTAGAAATATATAATAAAAGTATAACCATACATAGAATTG
CACCCTCCTCATAAATAGTAAGTAAAAGCTGCATAATAAGAAATACAATA
AGCTTTCATAAATTACACTAAAAGGAGATATAGGCTTGGGACAAATTTGT
GTTCAAGGAAAATCATTAAGGCCAAGGATGAGGCCACAGGTATGCACTAT
GATAAGGCAAGGCCATGTAAAAATTGTTGCTTTGAACAGAACAAAAGACT
GCTTTCAACCTGTTAGTGATATCTTTCTGTTACTCTCCTTTAATGTAACA
CTCTATCTATGAGGTAATTTCTTTTTTACATAGAGGACTTTTTGTCCAAA
AAATTTTTTTCCCCCCCAGCAATAAAAGGGGGGGCATTCACAGAATCATT
CAGTGTGTGTGTTGTCTATGTGAGTGACTTCTTTCCTTTCCTTTCTTTTC
TCTTTGGTTCAAAAAGAGTTGACAAGCTCCATGCCTCTTACCTGGCCAGT
GAGCGACTTCTGGCTAATTCGACAAAGACAGGAGCAATAGCAATAAAATC
CTTTTCATAATTCCCCAGCACGTATTTAAGTGCAAAGAGTTTAAGTTTCC
CCAGTGCTTATTCAAGCACAGAGAGTTCAAGAGAAAAGAATCTGGTGGTT
TTCAGCAACAGACTAAAGCAAGAACATGTTAAGTTTCCAGAAGCTACTAG
CTTCTAGCCCTCGGTCAGAGAGAGTTACAAGGCTGGAGGTGTCAGTCCTT
TTGGCTTCCATCCAACTTTGTATCCCACCTCAGCTTTCAACCCTAAAAGG
CCGGGGCCGCCCTCGGGCATTTTTACTCTCCTTCCTACCCCACCAACTTT
CTCATGAGCCCCCTCACACTTTCCTCCCATAATCAAGGCCTTTTCTTCCT
TTAACTTTAATGGTTACGCCCCTACTTGGGCATATTTTTCGTTTATAGAC
CAACCTCTAATCTCCGCCTTATTACTGGGAGTTCCTAACTAAAGCTTGGC
ATTCCCTTTTGGAATTTCCCCCTTTAATTAAGAATTGTCTAATTATATTC
GATAAGTTTCCTGCTTTTATTTCTAACACGTCTACATCTAACCTCTTTTC
CAACTTACCTCTTTCGTAGAGCTTTTTCTACTCTCTAACTTTTTCATATT
AACACCCGTTTTG
TTTTTTATCAAGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCCTTTAAGTTCATCTAGTTGTAACTGAAACT
TTCCTAGTTTCTTTTTATTGTTGTTAGTGATTTAATACAATTGCTTTTTA
AAATCTATCTAAGTTGCTTATTTCATTTATTTATCTATTTATCTATTTTA
GTATATCTACATATTCAGAAATTTATTTCTTTTTAGATTTCCCTGTTTGG
TGAAAAACATCTCTTTACCGTATAGTCTAATATTTTTTTCTGAATTGAAT
TGGGATCTCATGTTGTTAATCTGGTGTGTGTGTATGTGTTTGTGTGCATG
CATATCTGCCTGCATGCATGCATGTGTGTGTGTGCATATGTGCATGCTAA
TACTTCATCAACAATGCTCATCTCTCAAACAACCTACTTTTGGTTCATTG
ATTATTTATAATTTTTACTTCTATTTTATTAATTAATTCTGATCTTAATT
ATATCTTTTCATCTACTGCTTCTGTGTTTGACTTGTTCTTGTCTTTTCAT
GGCACTAAGATATATTTTTAAGTTACTTATCTTAGATCTCTCTGACATAT
TAGTACAGGCATTTGTGGCTATCAATTTACCTTTTTTATTATCTCACATA
TATTTGCATAAGGAATGTTTTTATTTTCACCAGATTCTTAGAGAATTTCT
TCTTTATTTATTTATTCAGTGAATTGCCAATCATTAAATAATGTGTCTAC
CCCATAGTTTCTCATGTAACTGGTTTTCTAGCTTTGACCCACTATCACCA
AGGATAAAGGAAGAAGTTACCTTATTTTTCCTATATTTTCAAAATCTTTC
CTGCAGTTTTATTATTGATTTTAGAGAACAGTTTCTGGGTCCACTGAAAA
TATGTCCATTCTGTATTGTTTGAATAGAATATATTGTAAAAGTCTGTTAG
GTTTATTAAATCAATGTCCTTCAACTTATAAATTTCCAAAAATTTTGTTT
GCATACTCTGTTTATACATAGATTGGATAGCTTGGCTTTTCCTCCTAAGT
ATGCTTTCCTTCCTACTCCTGTGAACTCGTCTAGCTCAACATTGTGGTTT
TATTAATTGGGTTTTACCCTTGGTTCTTGGCTACCTTTTTTTGCTATTAT
CACCCCCTTTTGTGGATCTTGTTTTCCACTTAGATACAATCCCTTCTCTT
CTCTTCAACCTCTCTTTATTTCTTAAATAAATTTTCTCATCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_g14.g1 MSMg01no124_g14.g1 CHROMAT_FILE:
MSMg01no124_g14.g1 PHD_FILE: MSMg01no124_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:29 2005
         (679 letters)



>mm_chr8_28779567_28780645
          Length = 1079

 Score = 1000 bits (517), Expect = 0.0
 Identities = 553/565 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcatctagttgtaactgaaactttcctagtttctttttattgttgttagtgatttaata 60
           ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 567 ttcatctagttgtaactgaaactttcctagtttgttgttattgttgttagtgatttaata 508

                                                                       
Query: 61  caattgctttttaaaatctatctaagttgcttatttcatttatttatctatttatctatt 120
           ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 507 caattgcttttaaaaatctatctaagttgcttatttcatctatttatctatttatctatt 448

                                                                       
Query: 121 ttagtatatctacatattcagaaatttatttctttttagatttccctgtttggtgaaaaa 180
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttagtagatctacatatccagaaatttatttctttttagatttccctgtttggtgaaaaa 388

                                                                       
Query: 181 catctctttaccgtatagtctaatatttttttctgaattgaattgggatctcatgttgtt 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 catctctttactgtatagtctaatatttttttctgaattgaattgggatctcatgttgtt 328

                                                                       
Query: 241 aatctggtgtgtgtgtatgtgtttgtgtgcatgcatatctgcctgcatgcatgcatgtgt 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 327 aatctggtgtgtgtgtatgtgtttgtgtgcatgcatatctgcctacatgcatgcatgtgt 268

                                                                       
Query: 301 gtgtgtgcatatgtgcatgctaatacttcatcaacaatgctcatctctcaaacaacctac 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtgtgtgcatatgtgcatgctaagacttcatcaacaatgctcatctctcaaacaacctac 208

                                                                       
Query: 361 ttttggttcattgattatttataatttttacttctattttattaattaattctgatctta 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 207 ttttggttcattgattatttataatttttacttatattttattaattaattctgatctta 148

                                                                       
Query: 421 attatatcttttcatctactgcttctgtgtttgacttgttcttgtcttttcatggcacta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 attatatcttttcatctactgcttctgtgtttgacttgttcttgtcttttcatggcacta 88

                                                                       
Query: 481 agatatatttttaagttacttatcttagatctctctgacatattagtacaggcatttgtg 540
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 87  agatatatttttaagttacttattttagatctctctgacatattagtacaggcatttgtg 28

                                    
Query: 541 gctatcaatttaccttttttattat 565
           ||||| |||||||||||||||||||
Sbjct: 27  gctataaatttaccttttttattat 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)