BAC Information

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BAC

Clone NameMSMg01-124H14
Chromosome8 (Build37)
Map Location 51,901,491 - 51,901,825
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039919, EG667495, LOC100039954, LOC100039966
Downstream geneLOC667517
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124H14.T7 (MSMg01no124_h14.b1)MSMg01-124H14.TJ (MSMg01no124_h14.g1)
ACCAG333819AG333820
length1,2871,341
length of high quality
(start - end)
331 (125 - 455)229 (135 - 363)
definitionCHROMAT_FILE: MSMg01no124_h14.b1 PHD_FILE: MSMg01no124_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:37 2005CHROMAT_FILE: MSMg01no124_h14.g1 PHD_FILE: MSMg01no124_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATATTTTNNNNAGCATTGGGCGCTATAGACTCCTAAGGGAGAGGATCCG
CGGAATTCCACATGAGGGCAGCCCTATATGGACTTAATGGATTATGTATA
AAAAAATAAATGGCCCTTAAACCATACCGGGGAAGATACAGGGAAAGCTA
CAGTGGAGAAATGAGAGATGGGCATGACCAGATTTGCCCCAACTTTTGAA
AATTTTAGCACACAATAGGATTTGTGAAAAGACCAGGGAAATGCATAGGG
CATATTGATGTGCATCAATACTGATTTACTCTTTCTTTTTTTTTCACTTA
TATACTGATTTTATTTCATTATTGATCATTTTCTCTTTTTTTAAAAATAT
TTTATTAGGTATTTTCCTCATTTACAATTCCAATGCTATCCCAAAAGTCC
CTCTTTCTCTCCCCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGTC
CTGTTTTTTTTCCGCCCCGGGGCATATAAAGTTTGCAAGACCAAAGAGGG
GGTCTTTTCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCT
AGAGTCAAGAGTTCCGGGGGTACTGATTAGTTCATATTGTTGTTCCACCT
ATAGGGTTGCAGATCCCTTTAGCTCCTTTGGGTACTTTCTCTAGCTCCTC
CATTGGAGGCCTGATAGAACTCTGCACCTGATTTACCTCTTTCATACCTT
TTCTTGGTTTTATGCTATTACTTTTTATTATTTTCTAGGAGATATCTAGG
TTGTTTGTAATTGTTTTTACCATAAAACTATCTCATTATTAGCCCGTCTA
TTTACTATATTAACTTTTTCCTGGTCGTTGATAATATATTTCTTTCTTCC
TTTTCTATATCTATCCTTATGGTATTGTTTACTCATTTATTTTCTATTTT
TGTCTTTAATCTTACCATTTGAATTTCTATAGCCATTTTTTCCTCATCTT
TTCGTGTTTATTGCGAATTTGGAATCTCTTCGGGTTGAATCTTATCTCTG
CCCCTTATTGATCCCACACCATTCCTCTTTCTGGTTTTTACCGATATCTC
CTCCGGAAATACTTCCTTTTCCTTCTCCTTTTTTCTCTGTAACCCCAGTT
TTGTGCGTGCTCCTTTCTCTTACTTCTGGTAGTTCGCCCAAGACCTATCC
TCTCTCTATGGTGCAACTCGATTACTTATCTCTTCACTAACATTACTTCA
CCTGTATACCCANTACCTAGTGTTATACATATCTTTATCTCCTCTCTCAA
TACTTCTCTTCCTCCTTTAATTCCGTCTCCGCTATTG
CCGGGAAAATTTNTAAACGATGTGAGGCGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAGGGCCACAATTTGT
TGACTAAAGGAGATAAAGGCCCTATAAAGCCCCTAGGAAGAANAACAATA
TCAACTAACTTTACCTCTCAGAGCTTCCAGGGACTAAACCACCAACCAAA
GAGTATACATGGGTGAGTCCATGGCTTTTGCTACATATGTAGCAGAGGAT
TGCCTTATCTTACATCAATGGGAGGGGAGGGGCTTCATCCTGGGAGGCTT
TTTGCCCCAGCAAAGGGGATGCTAGAGGGGTGAGTGGTTGGGTGAGTGGA
GGAGTACCCTCTTAACGGCAAAGGACGGGTAGAGATGGGATGCAGGATAT
GGGGAAGATTTTTTAGGAAGGTAGACAACAACTGAAATGTATATAAATAA
AATTACCAATTTTTTTTTTCCCCCCCCCTTACTCTATGTGCACGATTGAA
AAGAAGGGGGGGGTGTCTGTGTCCCCTATGTGTCTCGCCTATATAGGCCA
GAAATACAAGCATCAGTTCTACGTGAATTGTGCTCCAAAAGTGCATGTCA
CCCTACGGATGCTAGGTACTCTCTACTATCTTATCGTTCCCACGCCTTTT
AACTCCCCTGAGCATTCTTGTTGATATCGACATCCCTGTGCACTAGAGCC
ACTGATAAGAGACACCCTATACAGCAATTATCATTCGAGCTCACTGAGCG
CACTGTATTACTCCGACTCCTCCAATCTCCCCCCCACCCTACCTATCTTC
CATCATCCTTGTCGATCTTCACCTCCTCAATCACAACTCTCATTCTCCAC
ATCACTAATATACGCATCCGGATTGCTCTTCACTTCATATATTTTTTACT
CCTTTCCTTCACCCTAATGCCAAACCTTCCTTATTCTACACTCTCTCCTC
CATTTCTATTATCACATCTTCTCTACCTTCTCTCCCTCCATCTCTCCGTA
TCCGCATCTTACTCCCTCCTGTACCTAAGACCTTATTCCCAGTTCTCTCT
TCCCGACATGCCATCCCTCTCACCGCACTCCCATCCACTATCTCCTTAAC
TACCTATATCATAAANTCATACTCGCCTCTCGTCTACTACNAGTCTCGTT
CTCCATCGCCCTCTCTTTCTACTCCACCTAACTCCACATCTATTCACCAC
TCTCATCTCACCAAATCGTCTCCACTATTCGCTACTTTCCTATCCGTAAA
ACATTCCCTATATCTTTGTACTACATTTCCGACTCCAGTACGCCCTTGCC
TCCCACAACGCGCTCACTGTCGAACTAGTCTAACTACGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_h14.b1 MSMg01no124_h14.b1 CHROMAT_FILE:
MSMg01no124_h14.b1 PHD_FILE: MSMg01no124_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:37 2005
         (331 letters)



>mm_chr8_51901412_51902145
          Length = 734

 Score =  532 bits (275), Expect = e-155
 Identities = 318/335 (94%), Gaps = 6/335 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   taccggggaagatacagggaaagctacagtggagaaatgagagatgggcatgaccagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 taccggggaagatacagggaaagctacagtggagaaatgagagatgggcatgaccagatt 355

                                                                       
Query: 61  tgccccaacttttgaaaattttagcacacaataggatttgtgaaaagaccagggaaatgc 120
           |||   |||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 354 tgcataaacttttgaaaattttagcacacaataacatttgtgaaaagaccagggaaatgc 295

                                                                       
Query: 121 atagggcatattgatgtgcatcaatactgatttactctttc---tttttttttcacttat 177
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 294 atagggcatattgatgtgcatcaatactgatttactctttcttttttttttttcacttat 235

                                                                       
Query: 178 atactgattttatttcattattgatcattttctctttttttaaaaatattttattaggta 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 atactgattttatttcattattgatcattttctctttttttaaaaatattttattaggta 175

                                                                       
Query: 238 ttttcctcatttacaattccaatgctatcccaaaagtccctctttctctccccc---cca 294
           |||||||||||||||||||||||||||||||||||||||| | | | |||||||   |||
Sbjct: 174 ttttcctcatttacaattccaatgctatcccaaaagtcccccataccctcccccccacca 115

                                              
Query: 295 ctcccctacccacccactccccctttttggtcctg 329
           |||||||||||| ||||||||| ||||||||||||
Sbjct: 114 ctcccctacccatccactccccatttttggtcctg 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 734
Length adjustment: 9
Effective length of query: 322
Effective length of database: 725
Effective search space:   233450
Effective search space used:   233450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)