BAC Information

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BAC

Clone NameMSMg01-124I18
Chromosome8 (Build37)
Map Location 38,424,920 - 38,425,254
singlet/doubletsinglet
Overlap genenone
Upstream geneEG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121
Downstream geneLOC621149, Sgcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124I18.T7 (MSMg01no124_i18.b1)MSMg01-124I18.TJ (MSMg01no124_i18.g1)
ACCAG333872AG333873
length1,2551,263
length of high quality
(start - end)
420 (31 - 450)335 (129 - 463)
definitionCHROMAT_FILE: MSMg01no124_i18.b1 PHD_FILE: MSMg01no124_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:47 2005CHROMAT_FILE: MSMg01no124_i18.g1 PHD_FILE: MSMg01no124_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCGGTCATTCGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCTTAGAGCCTAATGAAGAAACCCATCTCAGTGGGATTTCCTAACTTCTC
TTATGGTAAACCCTATCTGGATAAGACGGTCCTTTCTGTCCTAGTAAACA
TCTAGCAGACTAGCCCTGCTGTTGGCTCCGTCTTTTATAATGCAAATTAG
TACTGAATAGGTAACTTCCTTGTTGAAATTTTTACTGAATACCAAGTAGT
CAGCTGCAAGGTCTTTCTAGGGTGTTGGAACACTGGTGAGGACTGACTGT
ACGAATATGAAAGGCACTTTATTATGATAACGCTGAAGGAGAGTAAGTGG
ATTTTCCTCTTCATTCTTGGATGACAGGTAGGGAAAAGAGAGGAGGGGCG
ACAACCTGCTCCTTAGTACAGGGCCAATTGGCTTTTTAGGGTGAGAGGCT
GTTTTTTTCTCGCCCTTCTAACAGTACGGTCTCCAACCTCTCAAAGGGGG
TCATTAATTAAGCTTAATCAGGCCACACTTAACTGAGGTGATCAAATGAT
TTTCTCATCCTTAGATGAGTGGGCTTTTACCATGGCTGGGGGGATATTGA
CCCAATTCCTCCTGTGGGTGCTGTCACGACCCACACTTGTAGCTCTTGGT
ATCTTTTGGGGAGGGGAGGTGAGGCAGAGCCTTATAAAGATATTCTTGAA
TCTAACTGGAACTATATACCACCCTCCCTCCCAACTGGGTGTATCACCAC
AGGGAACCTATAACTGGTTAAACTGCATCTTTCCCTGTAATACATCTCTG
CACCTAAGCTGGTACCCCTACTGTATCCGTATGCAGACCACCCCTTATAC
CTGTTTCGAGTTCTGTGCACTTCCTATAGGATAATTGTCCTACCTCTCAT
TTTCCCACGTCCTCGACTCAAATTATGTCCCTTGTTACCCCCCCCATTTG
TGCCCCTTTACCTCATATTAGTAGCTGCACTTCCCCCCCTTCTTCCCTGT
TCATTTCCCCCCTCCGATTTATCTTAAGTCTCCTTTTTCTATTTCGCTCG
TTATAATACCTTTCAATCCTTTCTCGGCTTCTTACTCCTTTTTTCTCAAT
CTACACCCATTCTCTTTCTATAAATCAAACCCTTTTCCCCTTCTTCCACC
CTTGCTCCATACTCTAATCTTTACATTCTAAATTGAGAGCTTCTACTACC
TGCTTCTAAAGTGTCCTTTTCAATTATCTTCTCTCCCTGTCCTTCCTCGC
TCACC
CTTTTTTCTAGGCATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTTTTAAGACCCATTTTCTTCTAAAGA
AAGAACCTTTCCTGCCTTATAAAACCTAAGATAAAAATCTGGGACCAAAA
ATTTTCTCTATATTTACTATTAAGCCTAGCCTTAACTACCATGACAATTT
TTATATTTATGGTTTATTTATTTTTAATGTATTAATTAATTTACTTGTAA
TATCTAAAAGTTCCAAAACATGTTGCTGAAGAAATTCTCCTATTAAAATC
ACATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATGACAGTTTT
CAAAGAGAGCATCTTGGATTTACACTCTGGCAGAGCAATAGTGCTCTTTC
CTATTTTTTATACGCTTACAAATAAAAATCCCAAAGCCAAGAATAGGCCA
TTTTCTTTTGGAATCCCCGACAATAAGGGACCAGAGAAGTTTTAAAACAT
CACAGCCTATTTCCATTGCTCTTGGTTACCCACCATAATTTGCTGGTAAG
ACTATATTGGTGAAGTCTGCAGGTGTTTGAGACCAAAAACAAGACTAAAC
TAAGCTAGTGCAGATGTTGAAATTCCGTCCCTTCTGGTTAGCTAAACTCA
AACTTGCTATCCAATCTATGAGAGGAAAAAAGTATCCATTAATATTCACT
ATCAATGAATGCTGCAAACTACAACAATGAATGACCTGGTAAAACGCACC
CACTGGTTTAATAGTGGCAAAAATATCAGGAGGTGTAGAGGTAACCAACC
ACTCCCTAATTGAATTAAAATCTCACCTCACTATAAGATTAATTCAACAG
GCACCATTATCAGGCCACAAGTTCTATAGGTATAACGGTCACAGGCCATA
ATTGTTAACTAATTGTTTCCGACTTATTACTATTCCCGTTAAACTATGGC
TCCCTCATGCCTTCATCTGAAAAGTTTTTGGTAGCTCCGCGAATTCTCAC
AATTCTTTATTTGCCTACAACCGTTAAAAAATTTGCTTAAATCATAATCC
CTGAATTGTCCCCTGTTCTTTTTATACAAGGGCCACTTTGTATGAATTGG
AACTGTTCCTTATCATGGTACAAAGGGGTTTTTTTCTCTTTCAAACAAAA
TTCCTGTTTTAAATGGTTCCCCCTTTTTTGTCTTATTAGCGAAAATTTTG
TTGGGAATACTTTGTACTAAACTACCTGGTTCACAATTTGTAACTCTTTG
TACATAACTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_i18.g1 MSMg01no124_i18.g1 CHROMAT_FILE:
MSMg01no124_i18.g1 PHD_FILE: MSMg01no124_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:47 2005
         (335 letters)



>mm_chr8_38424720_38425454
          Length = 735

 Score =  565 bits (292), Expect = e-165
 Identities = 324/340 (95%), Gaps = 10/340 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agataaaaatctgggaccaaaaattttctctatatttactattaagcctagccttaacta 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agataaaaatctgtgaccaaaaattttctctatatttactattaagcctagccttaacta 260

                                                                       
Query: 61  ccatgacaatttttatatttatggtttatttatttttaatgtattaattaatttacttgt 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatgacaatttttatatttatggtttatttatttttaatgtattaattaatttacttgt 320

                                                                       
Query: 121 aatatctaaaagttccaaaacatgttgctgaagaaattctcctattaaaatcacatttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatctaaaagttccaaaacatgttgctgaagaaattctcctattaaaatcacatttgt 380

                                                                       
Query: 181 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgttatgacagttttcaaagagagcatcttgga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgttatgacagttttcaaagagagcattttgga 440

                                                                       
Query: 241 tttacactctggcagagcaatagtgctctttccta-----ttttttatacgcttacaaat 295
           |||||||||||||||||||||||||||||||||||     |     | ||||||||||||
Sbjct: 441 tttacactctggcagagcaatagtgctctttcctagacact-----aaacgcttacaaat 495

                                                   
Query: 296 aaaaatcccaaagccaagaataggccattttcttttggaa 335
           |||||||||||||||||||||||| |||||||||||||||
Sbjct: 496 aaaaatcccaaagccaagaataggtcattttcttttggaa 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)