BAC Information

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BAC

Clone NameMSMg01-124N18
Chromosome8 (Build37)
Map Location 85,386,516 - 85,387,111
singlet/doubletsinglet
Overlap genenone
Upstream geneInpp4b, LOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330
Downstream geneRnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124N18.T7 (MSMg01no124_n18.b1)MSMg01-124N18.TJ (MSMg01no124_n18.g1)
ACCAG334106AG334107
length1,2591,267
length of high quality
(start - end)
596 (126 - 721)337 (123 - 459)
definitionCHROMAT_FILE: MSMg01no124_n18.b1 PHD_FILE: MSMg01no124_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:31 2005CHROMAT_FILE: MSMg01no124_n18.g1 PHD_FILE: MSMg01no124_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATACTNNNNTAACAGTGCGCGCTATAGACTCCTATANGGAGAGGATCC
GCGGAATTCTGCTATTAGAACACGCCTTTAAGAAACTGTTCTCCACTGGT
TTCTTTTAATCTCTGCCTTTACTGGAAAACACAGCTTAAAATGGTAACGA
ACACACACACACACACACACACACACACACACACACACACATACCACCTA
CTGACGCTGTGAATCCTCTAAGGCAGGGCTATTAGAGTGGGAATGGAGGC
AAAATGTCTCAATCTTAAAGTATGAGGAGAGGTCCATTTTCTAAGAAAAC
TAACGCCATGCCATGAGCTGGCTTCCAGAGCAGAGGAAAAGAAGTCACTT
TTACCCACACCACAGACTGGTCCTTAGACCAGCAGAGTGTGCATCACCAA
GGACCCCACCCCTGACTTAATAAATGTGAAATTCTCCTGAATTCATGCTG
ATCAGTCCTGTTTTAAAACTGCAATTCTGACAGCCACTGTCCTAAATATT
CAGGTCTGGGGGGGCGGGGGGGAGGGGCCTCATGACCAATCAGTGCTGGG
ATAAATACCAGAGAACTCTCTGCACATCTTCCAGCAAACGGAAATGCTGT
TCCAGAGAGGTTCCTACACTTTGCTGTATTTAAGACTCCCTCAATTAATT
GTTCCCAATTCAAAGGCCTGAAGGTCCTTTTTACCTTTTGCCCGCAACTG
TCGAAGCCTGAATTTGAGGCCCAGCAGAGGTCGCTGACGCCCATGAAGAG
AGACAGAGTGAGCGTTGCAAGGGGAGCCCATGAGCTTTTGACATCATACT
AAGCTCCTCCTTGCACGCCCACATCACACTCACCACCACACACATCCATA
TCTCTTTACATTCTCTCACTCTCTCTTACATATTCTTATCTCTCTTTAAC
TACTTACTTACACCAAACCTCTGTTTCCCTCTCCTTACCTTCTCCCCCAT
CCCATTTTGCCCCTTAACTCCCCCCCTCCCTCCGCAAATTAATGTGTTCC
TGTATCTAACCCCCCTATTCTGTTCCACAAACTCTACTCCCCTACCGTCC
CCTGGTTAACCCCCCCCTTTAACAGCAACGTACCCCCTCTCCTCTTTCAC
TCTTAACAAAATTCCTCTCCCTACCTAAAAAATCTTCAGTTTACCCTCAT
CCCTTCTCCCTTATTGTGCTCCCTAAAAAATTATAATTCTTTCCTCCCTC
TTCTTAATTCCCATATACTCCCCCCTCCTCTCTTCTTCATAAAAATACCT
CAACTCCTC
AAAAATTNNNNNAAAGCATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACTTCTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGACCTAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGTAGATGCTGGCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCAGTTTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGG
ATTCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAATGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGTTTTTTTTAACCCACATGCCCCTCAACAGAGGAATGGATACAAA
AGAGGTGGTACATCTACACAATGGACTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGTATCATCCT
GAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGA
TAAGTGGATATTAGCCCGAAACCTAGGATACCCCAAGATATAAGATACAA
TTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGCGGACCC
TATGTCCCTCCTTAGAAGTGGGAACAAAATACCCTTTGGAGGAATTACAG
AGACCAAAGTTTGGAGCTGAGATGAAGGAAGGCCCATGTAGAGACTTCCC
ACATGCAGGGGATCCACCCCCATAATCTACATCCAAACGCCTGAATTTAT
TTGCATACCCTAACAAGAATTTCATTGAAAGGACCCCAGATTGTACTTGT
CCTCTTGTGAAAACTATGCCGGTGGCCTACCAAACACCTAATCGGGATTG
CCCCATGGTCCGCTCAAACCGATGGATCTCCAGGGTCTCCCCAATGTGAG
TACCCTTAAATAAAAGTACCCCTAGGGAGCTTAAGGGGTATCTTGTAATC
CCTATAAGGGTGTAACACACTCCTTTTGGAACTATACCTCAAATACCCTC
GTAAAGTTTTTGGAATCTCCCACCTGGGTATTATGTTTATCCATAAAAAG
GGTCCTAAATCCGTGCCCCCTCTCCTTGTGAAAACGTACAAGGTCCCCTT
GTTGTCATGTTTCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_n18.b1 MSMg01no124_n18.b1 CHROMAT_FILE:
MSMg01no124_n18.b1 PHD_FILE: MSMg01no124_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:31 2005
         (596 letters)



>mm_chr8_85386316_85387311
          Length = 996

 Score = 1137 bits (588), Expect = 0.0
 Identities = 594/596 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacacagcttaaaatggtaacgaacacacacacacacacacacacacacacacacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacacagcttaaaatggtaacgaacacacacacacacacacacacacacacacacaca 260

                                                                       
Query: 61  cacacataccacctactgacgctgtgaatcctctaaggcagggctattagagtgggaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacataccacctactgacgctgtgaatcctctaaggcagggctattagagtgggaatg 320

                                                                       
Query: 121 gaggcaaaatgtctcaatcttaaagtatgaggagaggtccattttctaagaaaactaacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggcaaaatgtctcaatcttaaagtatgaggagaggtccattttctaagaaaactaacg 380

                                                                       
Query: 181 ccatgccatgagctggcttccagagcagaggaaaagaagtcacttttacccacaccacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatgccatgagctggcttccagagcagaggaaaagaagtcacttttacccacaccacag 440

                                                                       
Query: 241 actggtccttagaccagcagagtgtgcatcaccaaggaccccacccctgacttaataaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actggtccttagaccagcagagtgtgcatcaccaaggaccccacccctgacttaataaat 500

                                                                       
Query: 301 gtgaaattctcctgaattcatgctgatcagtcctgttttaaaactgcaattctgacagcc 360
           ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 501 gtgaaattctcctgaattcatgctgatcagtcctggtttaaaactggaattctgacagcc 560

                                                                       
Query: 361 actgtcctaaatattcaggtctgggggggcgggggggaggggcctcatgaccaatcagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgtcctaaatattcaggtctgggggggcgggggggaggggcctcatgaccaatcagtg 620

                                                                       
Query: 421 ctgggataaataccagagaactctctgcacatcttccagcaaacggaaatgctgttccag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgggataaataccagagaactctctgcacatcttccagcaaacggaaatgctgttccag 680

                                                                       
Query: 481 agaggttcctacactttgctgtatttaagactccctcaattaattgttcccaattcaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaggttcctacactttgctgtatttaagactccctcaattaattgttcccaattcaaag 740

                                                                   
Query: 541 gcctgaaggtcctttttaccttttgcccgcaactgtcgaagcctgaatttgaggcc 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcctgaaggtcctttttaccttttgcccgcaactgtcgaagcctgaatttgaggcc 796



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 26  acacacacacacacacacacacacacacacacacacacaca 66
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 acacacacacacacacacacacacacacacacacacacaca 940



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 26  acacacacacacacacacacacacacacacacacacacaca 66
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 acacacacacacacacacacacacacacacacacacacaca 942



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 26  acacacacacacacacacacacacacacacacacacacaca 66
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 acacacacacacacacacacacacacacacacacacacaca 944



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 26  acacacacacacacacacacacacacacacacacacacaca 66
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 acacacacacacacacacacacacacacacacacacacaca 946



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 26  acacacacacacacacacacacacacacacacacacacaca 66
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 acacacacacacacacacacacacacacacacacacacaca 948



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 26  acacacacacacacacacacacacacacacacacacacaca 66
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 acacacacacacacacacacacacacacacacacacacaca 950



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 26  acacacacacacacacacacacacacacacacacacacaca 66
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 acacacacacacacacacacacacacacacacacacacaca 952



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 26  acacacacacacacacacacacacacacacacacacacaca 66
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 acacacacacacacacacacacacacacacacacacacaca 954



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 26  acacacacacacacacacacacacacacacacacacacaca 66
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 acacacacacacacacacacacacacacacacacacacaca 956



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 26  acacacacacacacacacacacacacacacacacacacaca 66
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 acacacacacacacacacacacacacacacacacacacaca 958



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 26  acacacacacacacacacacacacacacacacacacacaca 66
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 acacacacacacacacacacacacacacacacacacacaca 960



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 26  acacacacacacacacacacacacacacacacacacacaca 66
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 acacacacacacacacacacacacacacacacacacacaca 962



 Score = 78.1 bits (40), Expect = 2e-18
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 27  cacacacacacacacacacacacacacacacacacacaca 66
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 cacacacacacacacacacacacacacacacacacacaca 938



 Score = 78.1 bits (40), Expect = 2e-18
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                       
Query: 26  acacacacacacacacacacacacacacacacacacacacatac 69
           ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 924 acacacacacacacacacacacacacacacacacacacaaatac 967



 Score = 68.4 bits (35), Expect = 1e-15
 Identities = 38/39 (97%), Gaps = 1/39 (2%)
 Strand = Plus / Plus

                                                  
Query: 29  caca-cacacacacacacacacacacacacacacacaca 66
           |||| ||||||||||||||||||||||||||||||||||
Sbjct: 894 cacatcacacacacacacacacacacacacacacacaca 932


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 110
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 17
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)