Query= MSMg01no124_o07.b1 MSMg01no124_o07.b1 CHROMAT_FILE:
MSMg01no124_o07.b1 PHD_FILE: MSMg01no124_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:36 2005
(517 letters)
>mm_chr8_34368323_34369239
Length = 917
Score = 984 bits (509), Expect = 0.0
Identities = 515/517 (99%)
Strand = Plus / Plus
Query: 1 taatcaagaaatttataaatctcctttgattcacatttagactttttatttatcgtgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatcaagaaatttataaatctcctttgattcacatttagactttttatttatcgtgtgt 260
Query: 61 atgtgtgcacgcatgacatggtgcatgtatgtaggtctgaggagaaactgagggagccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtgtgcacgcatgacatggtgcatgtatgtaggtctgaggagaaactgagggagccaa 320
Query: 121 gttctctccttccacagtccacaggtctcagaccccaagcccaggccactaggctcctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttctctccttccacagtccacaggtctcagaccccaagcccaggccactaggctcctgt 380
Query: 181 accaagccttcatcccctcagtcatctcactggcccactttaacttttaccttctttcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accaagccttcatcccctcagtcatctcactggcccactttaacttttaccttctttcca 440
Query: 241 tggactcttaacaatggcaagccattagcatggtgacttttactaatccacaatcttgct 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tggactcttaacaatggcaagccattagcatggtgacttttactaaaccacaatcttgct 500
Query: 301 accatatcttcctgcaaagttctaagtgatgtcactgatacagacacacacagagagaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accatatcttcctgcaaagttctaagtgatgtcactgatacagacacacacagagagaat 560
Query: 361 tttaataaatgtcatgcagcagaactgaagcagggacagcctgggcggtggcactgactg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaataaatgtcatgcagcagaactgaagcagggacagcctgggcggtggcactgactg 620
Query: 421 ggcacttgatgggatcagagtcacaccagcataagccttggtgatttacttagagattgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcacttgatgggatcagagtcacaccagcataagccttggtgatttacttagagattgc 680
Query: 481 agatcaggtgaactgtgttgggaagacccaccctgaa 517
||||||||||||||||| |||||||||||||||||||
Sbjct: 681 agatcaggtgaactgtggtgggaagacccaccctgaa 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no124_o07.g1 MSMg01no124_o07.g1 CHROMAT_FILE:
MSMg01no124_o07.g1 PHD_FILE: MSMg01no124_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:36 2005
(280 letters)
>mm_chr8_34533193_34533872
Length = 680
Score = 511 bits (264), Expect = e-149
Identities = 276/284 (97%), Gaps = 8/284 (2%)
Strand = Plus / Minus
Query: 1 cactgttatggcagattttggaagtctggataaagccaagtccaacacttagtagagatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cactgttatggcagattttggaagtctggataaagccaagtccaacacttagtagagatt 421
Query: 61 tccccc----ttgttttcaggagaaaagaattctataatagaatgaagtgtgaataacat 116
| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 t----ctgagttgttttcaggagaaaagaattctataatagaatgaagtgtgaataacat 365
Query: 117 tggccagaggaagagatggggaggctaaagatgagttccagaatggatcctatagacatt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tggccagaggaagagatggggaggctaaagatgagttccagaatggatcctatagacatt 305
Query: 177 cagaatcctgacactacagtgaagttttcaggggatttgacacctccttaggtttgagga 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cagaatcctgacactacagtgaagttttcaggggatttgacacctccttaggtttgagga 245
Query: 237 tagcatattccacaaatgagaatattgctttgacctatgtaatg 280
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tagcatattccacaaatgagaatattgctttgacctatgtaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
