BAC Information

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BAC

Clone NameMSMg01-125A07
Chromosome8 (Build37)
Map Location 93,725,405 - 93,725,718
singlet/doubletsinglet
Overlap genenone
Upstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222
Downstream geneRpgrip1l, AJ237917, LOC100041254, LOC674324, LOC100040628, Irx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125A07.T7 (MSMg01no125_a07.b1)MSMg01-125A07.TJ (MSMg01no125_a07.g1)
ACCAG334220AG334221
length689714
length of high quality
(start - end)
318 (37 - 354)288 (89 - 376)
definitionCHROMAT_FILE: MSMg01no125_a07.b1 PHD_FILE: MSMg01no125_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:54 2005CHROMAT_FILE: MSMg01no125_a07.g1 PHD_FILE: MSMg01no125_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATT
GATCCATTCTTATCTCCTTGTACAAAGCTCAAGTCCAAGTGGATCCAGCA
CCTTCACATAAAACCAGAGACACTGAATCTAGTAGAAGAGAAAGTGGGGA
AGAGCCTCGAGCACATGGGCACAAGGGAAAATTTCCTGAACAGAACACAA
ATAGCTTATGCTCTAAAATCAATGGGACCTCATAAAAGAGCACCATGAGG
ACCCCATAAAAATGACTAGGCAGGAAGAACATAAAGAATGCTTAGAAAAA
TTAAAATGCCAAGTGAAGGAAGAAGGACACAGTTTTCAGTCCTTTCTTTT
ATATTTGTTCGCCCACCCCCCCCAGTGGTTAAGAGCACCAGTCATTCTTC
CCAGGGATCTGGGAACCACAAACACAGAACACACGAGGGGGGTCATAACC
ATCTGTGTGACTCCAGCTCCAGGAGACCCAGGTCCCTCTTCTGGCCTTCA
CAGAAACTACATGCACAGACCCTGCATGTAATCATGACCTCAATCCACTC
AGGTCAGCTTCGTGCTTAAATCCCAAACGTACTCTTGCATGGCTCTAAAG
GCTAAAAGTCCTGGCCGTGTCCGTGTCACTCTTGCCCCCTGAAGGCACTG
GAGTAAGAGCCCCCCCTTCCCCCTCTACTGATATCAGAC
NNTTTTTCTCTTNNCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTGTTGTTGG
GTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTCTAGACAGGG
TTTCTCTGTGTAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCT
GGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATT
AAAGCCGTGGGCCACCACTGCTGGCTTAAGGTTTTTTTTTAAATATATAT
ATGTATACTTATTTATTTGTACATTGTGATATGCATGTAGGACCCAGCTG
TGGGGCTGAATGGGGTCTGCAGGATTCTGGTTCACCTGACGGTGGAAAGA
AATGACTTCTCCAAGGACCTTAAGTGCCACTTACAGCAGCTCTTTTAGAT
GAAGGCCTTCTCTGACAATTTTCAATGAAACGGCTCTCTGAACCAATCTT
GGCTTGAGCACATACTTTGATTTGGGGCGGGGTTGTATGCGCATACTCCC
CCTGCCGCGAACCAGGGCTATATGCGACTTTTGCACAGCGCCAAGGGGCT
TTTTTCTCTCTTGTACCTCCCTTACCCGACCTCTTTCCTCCACCCGTAAA
ATCCTTTTTTCATCCGAATCTTCTTCTCCCCGTACCATCACACCGGCCAC
CCTTTAACCCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_a07.b1 MSMg01no125_a07.b1 CHROMAT_FILE:
MSMg01no125_a07.b1 PHD_FILE: MSMg01no125_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:54 2005
         (318 letters)



>mm_chr8_93725004_93725721
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 313/314 (99%), Gaps = 1/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattc-aattgatccattcttatctccttgtacaaagctcaagtccaagtggatccagc 63
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gaattcaaattgatccattcttatctccttgtacaaagctcaagtccaagtggatccagc 656

                                                                       
Query: 64  accttcacataaaaccagagacactgaatctagtagaagagaaagtggggaagagcctcg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 accttcacataaaaccagagacactgaatctagtagaagagaaagtggggaagagcctcg 596

                                                                       
Query: 124 agcacatgggcacaagggaaaatttcctgaacagaacacaaatagcttatgctctaaaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 agcacatgggcacaagggaaaatttcctgaacagaacacaaatagcttatgctctaaaat 536

                                                                       
Query: 184 caatgggacctcataaaagagcaccatgaggaccccataaaaatgactaggcaggaagaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 caatgggacctcataaaagagcaccatgaggaccccataaaaatgactaggcaggaagaa 476

                                                                       
Query: 244 cataaagaatgcttagaaaaattaaaatgccaagtgaaggaagaaggacacagttttcag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cataaagaatgcttagaaaaattaaaatgccaagtgaaggaagaaggacacagttttcag 416

                         
Query: 304 tcctttcttttata 317
           ||||||||||||||
Sbjct: 415 tcctttcttttata 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)