BAC Information

Click to search

BAC

Clone NameMSMg01-125K09
Chromosome8 (Build37)
Map Location 70,171,796 - 70,172,075
singlet/doubletsinglet
Overlap genenone
Upstream geneNpy5r, Npy1r, BC053440, LOC665453, Nat1, Nat2, LOC100041265, Nat3
Downstream genePsd3, Sh2d4a, LOC665510, 4732435N03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125K09.T7 (MSMg01no125_k09.b1)MSMg01-125K09.TJ (MSMg01no125_k09.g1)
ACCAG334681AG334682
length690722
length of high quality
(start - end)
314 (33 - 346)280 (89 - 368)
definitionCHROMAT_FILE: MSMg01no125_k09.b1 PHD_FILE: MSMg01no125_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:45 2005CHROMAT_FILE: MSMg01no125_k09.g1 PHD_FILE: MSMg01no125_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCGCAGTTG
AATCCTTCTCAAAGTCTGTTTTACGGGAACCTTCATTACCATGACCCGCA
GTTCTGGTTCCGGAATGAGGGATCTTCCTTGCGCCGGTGATGGTTAACTC
CCGTCCCGAGTTTTCTTGTATTTTCTCGTCCCGGATTTTCTCGTCCCGGG
TTTCAGCACCAACTCTTAAACGCGTTCTCACGACCGGCCAGGAAGAACAC
AACAAACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGA
GCAGGAGCGCAAGCCCCCAGCCCCAAAAACGAAAGCCCCCCGTTTATTAT
TTTTACCACCCCCAGTGCCAGAGCGCCAGAGCGNCAGAGCGAGAGCTCTA
TTGTTTACATAAAAAAAAGCCAGAGGGGGGAGCGGGAGCCAGAGAGCAAA
AGCGCAAGAGCGCAAGCAAGAGAGAGAATGGTGGACACCCCGTCCCCTTT
TAGGAGAATTATCCTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCAG
CCCATGGCCGAGTTGACGTCCCGGGAAAGGCAGAGCACATGTAGTGGAAA
ATTACTCTTGGCTCATGCTTAGATTATTTGTTTACCCCTAGAACACAGGA
TGTTCTCGCCATCTTGTGATGGCAAATGTGGGGGCGGCTA
NAAGAACNNNTATACGATGATAGCGAGXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGGAGCAATG
TGGAAGAAGAAATGGGTTAGAGATGGGCTAGGATTTTGCCAGGAGTAAAG
GAGAAAACAAGCATATTTTTAATTTGGGAAATAAAGTCAGCAGAACAAAC
ACATACACAAATGATCACATCACTAAAAACTGGTCTAAAAACAGCCAACT
GCTTTAATTCATAGGACTGAAAACACAGAGAAACCAATCAGTGTGAAAAC
ACCTGGAGACTCCCAGCCAGTGACCTGTATAAGTGTATGGTTGAGGCTTA
TGTATAGCACTGCAGTCTGCATATTTTTCTGCACCCCCCCCCCTGCAGAG
AAGCAAATGCCCCAGAATAATGGAGGGCTTTATTCAAGAAAGAAAGAGTG
AAGGGAAAACAAAGATAAAGACAGAACAATGTGGGGAACTAAATTGTTAG
GTCCAAATTGTCAGTGTTGTGGTTTAGAAAACTCATATGTGGACTTTCCC
AGCAATGAACAGCTCCGCTTTGTGGGTAAACACAGATAGGGCAGGCTAAA
AAGAGAGAAAGTGAATACACCTGAGGCAAATGCCAGACGAAGACCACAGC
CCAATATTCTGCTCCCAGTCCCGAAGTAAAAACCTCGCGCTTTACCCACG
GTCTCCATTGCTAACACCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_k09.g1 MSMg01no125_k09.g1 CHROMAT_FILE:
MSMg01no125_k09.g1 PHD_FILE: MSMg01no125_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:45 2005
         (280 letters)



>mm_chr8_70171596_70172275
          Length = 680

 Score =  526 bits (272), Expect = e-154
 Identities = 278/280 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaggagcaatgtggaagaagaaatgggttagagatgggctaggattttgccaggagtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaggagcaatgtggaagaagaaatgggttagagatgggctaggattttgccaggagtaa 260

                                                                       
Query: 61  aggagaaaacaagcatatttttaatttgggaaataaagtcagcagaacaaacacatacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagaaaacaagcatatttttaatttgggaaataaagtcagcagaacaaacacatacac 320

                                                                       
Query: 121 aaatgatcacatcactaaaaactggtctaaaaacagccaactgctttaattcataggact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgatcacatcactaaaaactggtctaaaaacagccaactgctttaattcataggact 380

                                                                       
Query: 181 gaaaacacagagaaaccaatcagtgtgaaaacacctggagactcccagccagtgacctgt 240
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 381 gaaaacacagagaaaccaatcagtgtgaaaacagcaggagactcccagccagtgacctgt 440

                                                   
Query: 241 ataagtgtatggttgaggcttatgtatagcactgcagtct 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataagtgtatggttgaggcttatgtatagcactgcagtct 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)