BAC Information

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BAC

Clone NameMSMg01-126H04
Chromosome8 (Build37)
Map Location 36,201,391 - 36,201,531
singlet/doubletsinglet
Overlap genenone
Upstream geneLeprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797
Downstream geneLOC666804, Ppp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126H04.T7 (MSMg01no126_h04.b1)MSMg01-126H04.TJ (MSMg01no126_h04.g1)
ACCAG335260AG335261
length700709
length of high quality
(start - end)
373 (44 - 416)141 (72 - 212)
definitionCHROMAT_FILE: MSMg01no126_h04.b1 PHD_FILE: MSMg01no126_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:50 2005CHROMAT_FILE: MSMg01no126_h04.g1 PHD_FILE: MSMg01no126_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATAAATTTATACAAGTAATTCCCATCCCTCTATAGAATAAAAGCTGC
AAATTGAGGTTTGTAAACCTTCATGTGTCATGGGTTAATTGCACTAGAAA
AAGAAACCAGGCTTGAAACAAATTTAAGATCAAACATCCCTTCTGGGTTA
GGTATAAGACCATTATTTGGTAACTAAAGGTCATAAACTGGGAATGGACA
ATTTATTGTAGATGCAAGGACAGAAAATAAAATATTGACTAATTTATCTA
TACAAAACTTCAAAACTAATAAGATGGTTTGTCGTTTGACAAAACCATGC
TAACTTTCGACATAAAAATTATTGCTTTAAACTTTTACTGAACTAATAGG
GCTGGTTACAGATAATGCTTAGTGAGATACTAGTCTTAATGGAAAGACAT
AAGCAATTCTACTATGATTCCTTAATTCCTATCGATCTATGACGTGAATT
ACTGCCCTTAAACTTACTATGAACTTATTGGAATGCGAAAGTATTTTACA
AATTTATGCAATCAACTGCCCTGCTGTAATGGCTCTTCCCCGTTGTGCGT
GGTACTTGTTTTAGATAGAAAACCATTCCCAATAACGGCCATTGAAAGGT
ATACCCTTTTCTCTCCTTTAAGCAAACAAGCCGTGAATTCACCTTTTCCC

AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAGCCTCACTTACTAACCTTTAAGAAGG
AGGAAAGGACTAGAGATGAAATTGTACTTACATGTGCAATCTTTACTCTA
TCGTGCCTGTAAAATGAAATCTATGAACACTGAAAGGCAGGTGAACCTCC
TGGATGGTGAATGTCCTGGCACGACAAAGGAGTTGATGTGCCCTGCAATC
AATAGTTTAGGGGCTAAGCATTCATTTCTAAAGAGAACTAGGCTTAGCCA
TTGGTCTTGTAAGACTCCTGTGAGCCTTAGCTTACCAGGGATCTCCCTAA
GTGAACCACATGGAGCTGGTGCTGATACAAAAAGTATGACGTAATGTATT
GTTCTAGTGAACTGCCCTCATCCTAGACTCATTGATTAGGTGGAGACCAT
CCAGTACCCGTTCATTAAACTCTTATATGGTTTCCAGTTCCATAACATAT
CCTCTGCTATTATTCTCACTTTGACTGTCGCTATGGTGCACCCTTTAAAT
TGTATGCCCTTTACGGTGTGAGGTGTACATGATTTCCCCTTTCCTGACTG
CCTACCCCTTTCCTCACCCGCCTTCCGTTCGCCCCTGCCTTTTGTTAACT
GCTTTTACCCTTTTTCCCCAAGACAGGTTTTTCTTTCGTGCACTTTCCAA
TATCTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_h04.g1 MSMg01no126_h04.g1 CHROMAT_FILE:
MSMg01no126_h04.g1 PHD_FILE: MSMg01no126_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:50 2005
         (141 letters)



>mm_chr8_36201191_36201731
          Length = 541

 Score =  273 bits (141), Expect = 4e-78
 Identities = 141/141 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagcctcacttactaacctttaagaaggaggaaaggactagagatgaaattgtacttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctagcctcacttactaacctttaagaaggaggaaaggactagagatgaaattgtacttac 282

                                                                       
Query: 61  atgtgcaatctttactctatcgtgcctgtaaaatgaaatctatgaacactgaaaggcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 atgtgcaatctttactctatcgtgcctgtaaaatgaaatctatgaacactgaaaggcagg 222

                                
Query: 121 tgaacctcctggatggtgaat 141
           |||||||||||||||||||||
Sbjct: 221 tgaacctcctggatggtgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)