BAC Information

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BAC

Clone NameMSMg01-126I05
Chromosome8 (Build37)
Map Location 32,956,585 - 33,060,889
singlet/doubletdoublet
Overlap geneNrg1
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340
Downstream gene2010007E15Rik, EG666589, EG546052, LOC100042715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126I05.T7 (MSMg01no126_i05.b1)MSMg01-126I05.TJ (MSMg01no126_i05.g1)
ACCAG335306AG335307
length710711
length of high quality
(start - end)
503 (69 - 571)472 (74 - 545)
definitionCHROMAT_FILE: MSMg01no126_i05.b1 PHD_FILE: MSMg01no126_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:56 2005CHROMAT_FILE: MSMg01no126_i05.g1 PHD_FILE: MSMg01no126_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,956,585 - 32,957,087)(33,060,422 - 33,060,889)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGA
ATTCTATGGCTCACGCTTCAGCAATGTTTTTGCTGTAGGCAGATGGGACA
TATGGAAACTATGAACTGGCTTCATAGGCAGGATCTTGATGAGCCAATGA
AATGTTTTTATGCTTTCTGTTTCTATTCAAGTGCTTTAGTGAACAATAAA
TTATCATAGGACATGCCACGTCATGTGACTTTGTTTAAATTCTGTTATTA
CTATTACTATTATTATTATATTTTCTTTTTGGTTTTTTAAAACAGGGTGT
CTCTGTACAGGTCTGGCTGTTCTAGATCTCACTCTGTAGAGGCTGACCTT
GAACTCAGAGACCCAATTGCCTCTGCTTCCCAAGTTCTGGGATTAAAGGC
AAGTGTTACTACTGCCCGGCTGAATTATTATCATTTTTATTGTTATAGAT
GTTATTAATATAAGACAGTTTCTTTACAAGGTTTGACCTATTTTGTACAC
ATGCTAAATGTAAGTATTCAAATTCTTCATTGAAGGCACCGAATTACTTT
GATGCATCAATCAAGTTACATTCCAAAAATGGGGGGAGACCTACCATCAG
CAATGTCAAAGATTTTCTTTTTAAAAATCTTTATAAGATATTCTTGTTAT
TACACATGGTATGGAACGAAAGACATCATATTAGAACAGAACATGTTATT
TTCTACAACC
TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGCTAGAACTTGATGTGGTTTGCCA
GTTTGTACTAAAGAAAAAAAAAGAAAAGAAAAAAAGAAAGAAAGAAAACA
CCCTCAAATGTTGCATGCTTTCATTTTTGAACACAACAGTATTAGAAATT
CCCCCTTGGTTTCATATGACATTGCCTTTGACGCTCTTGATTCCCCATTT
CTTTTTTTCCTTTCCAAGAAACCCACTATCTGTCTCTCTCAAGTGTTCCT
TTCTTCCTCATTCTCCCCAGGGGGAGTAAACGGTTCCTCGTAATTACTTA
GCATGTTTCGTCTCATGCTCTTCCCCCAAAAAAGGAGAACTATTTATTTG
GACGTCTTCAAGGCACTGCTCGTCCTTGCTCGCACTCATTTGCAGTTGGA
TCATAGGCGATGGTCCCAGCTCCTAGCCTCCTGCACTACCCCATAATCGT
CTGTCACCTTTTGTTTTTTGCAGACCTCACCACTGGCATGTTATCCTCAA
CTGAAAGATCCTATGTGTCCTCAGGCAAGGAAAAGACCCTGGCAAGCTTG
ACTAACCCGTATGAGAGGCTTAATTGCTGGCTGCTCTTCACACTAACCAG
TCCTCCCTTTGTATCCCAATTTCAGCTGCTCCCGTCCTCTCCAATATTCT
TCCCATTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_i05.b1 MSMg01no126_i05.b1 CHROMAT_FILE:
MSMg01no126_i05.b1 PHD_FILE: MSMg01no126_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:56 2005
         (503 letters)



>mm_chr8_32956385_32957287
          Length = 903

 Score =  965 bits (499), Expect = 0.0
 Identities = 502/503 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcaatgtttttgctgtaggcagatgggacatatggaaactatgaactggcttcatagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagcaatgtttttgctgtaggcagatgggacatatggaaactatgaactggcttcatagg 260

                                                                       
Query: 61  caggatcttgatgagccaatgaaatgtttttatgctttctgtttctattcaagtgcttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggatcttgatgagccaatgaaatgtttttatgctttctgtttctattcaagtgcttta 320

                                                                       
Query: 121 gtgaacaataaattatcataggacatgccacgtcatgtgactttgtttaaattctgttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaacaataaattatcataggacatgccacgtcatgtgactttgtttaaattctgttat 380

                                                                       
Query: 181 tactattactattattattatattttctttttggttttttaaaacagggtgtctctgtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactattactattattattatattttctttttggttttttaaaacagggtgtctctgtac 440

                                                                       
Query: 241 aggtctggctgttctagatctcactctgtagaggctgaccttgaactcagagacccaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtctggctgttctagatctcactctgtagaggctgaccttgaactcagagacccaatt 500

                                                                       
Query: 301 gcctctgcttcccaagttctgggattaaaggcaagtgttactactgcccggctgaattat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctctgcttcccaagttctgggattaaaggcaagtgttactactgcccggctgaattat 560

                                                                       
Query: 361 tatcatttttattgttatagatgttattaatataagacagtttctttacaaggtttgacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatcatttttattgttatagatgttattaatataagacagtttctttacaaggtttgacc 620

                                                                       
Query: 421 tattttgtacacatgctaaatgtaagtattcaaattcttcattgaaggcaccgaattact 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 tattttgtacacatgctaaatgtaagtattcaaattcttcattgaaggcaccgaattatt 680

                                  
Query: 481 ttgatgcatcaatcaagttacat 503
           |||||||||||||||||||||||
Sbjct: 681 ttgatgcatcaatcaagttacat 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no126_i05.g1 MSMg01no126_i05.g1 CHROMAT_FILE:
MSMg01no126_i05.g1 PHD_FILE: MSMg01no126_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:56 2005
         (472 letters)



>mm_chr8_33060147_33061018
          Length = 872

 Score =  897 bits (464), Expect = 0.0
 Identities = 467/468 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgctagaacttgatgtggtttgccagtttgtactaaagaaaaaaaaagaaaagaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 catgctagaacttgatgtggtttgccagtttgtactaaagaaaaaaaaagaaaagaaaaa 684

                                                                       
Query: 61  aagaaagaaagaaaacaccctcaaatgttgcatgctttcatttttgaacacaacagtatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aagaaagaaagaaaacaccctcaaatgttgcatgctttcatttttgaacacaacagtatt 624

                                                                       
Query: 121 agaaattcccccttggtttcatatgacattgcctttgacgctcttgattccccatttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agaaattcccccttggtttcatatgacattgcctttgacgctcttgattccccatttctt 564

                                                                       
Query: 181 tttttcctttccaagaaacccactatctgtctctctcaagtgttcctttcttcctcattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttttcctttccaagaaacccactatctgtctctctcaagtgttcctttcttcctcattc 504

                                                                       
Query: 241 tccccagggggagtaaacggttcctcgtaattacttagcatgtttcgtctcatgctcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tccccagggggagtaaacggttcctcgtaattacttagcatgtttcgtctcatgctcttc 444

                                                                       
Query: 301 ccccaaaaaaggagaactatttatttggacgtcttcaaggcactgctcgtccttgctcgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccccaaaaaaggagaactatttatttggacgtcttcaaggcactgctcgtccttgctcgc 384

                                                                       
Query: 361 actcatttgcagttggatcataggcgatggtcccagctcctagcctcctgcactacccca 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 383 actcatttgcagttggatcataggcgatggccccagctcctagcctcctgcactacccca 324

                                                           
Query: 421 taatcgtctgtcaccttttgttttttgcagacctcaccactggcatgt 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taatcgtctgtcaccttttgttttttgcagacctcaccactggcatgt 276


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)