BAC Information

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BAC

Clone NameMSMg01-126M13
Chromosome8 (Build37)
Map Location 38,705,090 - 38,705,421
singlet/doubletsinglet
Overlap geneSgcz
Upstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126M13.T7 (MSMg01no126_m13.b1)MSMg01-126M13.TJ (MSMg01no126_m13.g1)
ACCAG335506AG335507
length715708
length of high quality
(start - end)
463 (43 - 505)332 (69 - 400)
definitionCHROMAT_FILE: MSMg01no126_m13.b1 PHD_FILE: MSMg01no126_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:18 2005CHROMAT_FILE: MSMg01no126_m13.g1 PHD_FILE: MSMg01no126_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTCAGTTGACGGTTTGAGTTTCTTTGTTTTGTTGTTGTTGTTGGGTT
TTTTGTTTTCATTTTCATTTTAAGTCTTCAAAAATTTATATTTATTTTCT
TCAATTCTTTCTGTTTTCTGGTCTTTCTCTAAGTGATTTATTCATTTCTC
CATTTTTTTTAGTTTTTTTTTTAAGTTTTTTCCCCTGGATTCATCAAGGG
ATTATTTATTTCTGCTTGAGGAACACTGTCATCTCCATATAGTTTTTTTT
TTTTAAGAAATTTGGAATATTCAGGAATGTTGAAGTAGAAAAGGTGAGTT
CTAGTGAAGAAATATTGCTTTAGCTGTTATTGATTGTGTTTTTACTCTCA
TATCTATGCATATGCCCTTGGTTTTGCATCTATGTATTATGGGTCTAGGT
GATAATATCTAAATTTGTCTTTGTTAGGAGGGAATTTTGTTTCTCACTTT
CTGTTGTATGCACGTTGAGGATTGCGATGTTCGCTTCCTTCTGCACATTT
CTTCAAATATTCTTTTTACCCCCTATTTCCCTTTATTTTCCCCCCCCTTT
TATATTTTTTTTCATACCCTCCACACCCTTTTTCTTTATCTCCTTGTTCC
CCTTTTCCTCATTTGCCCCCCATTGACCCCCCTCCTTACCCTTATCTCCC
ATCCCCCTTTTTTTA
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTAGACATATTTAAAATGAACACACATGACTA
TAAGTATAATGAGATGCATAACATACTGGTATGTTTAAGTGATGGGCAGT
GAAAGTATTGTAAGAATTATTGGTGTATGAAAGAACCTAAGGCCAAAGCA
AAGCAAATTTAAGAAGCAACAGTCAATAGGCACTTCCTCTTATCTAATAC
AGGAACAGAACCATTAGGACTGTGGTTTTAATCATTGTGCATTTTTGTTA
ACAACATGTTAGTTCACATTGCCTTCACCATAGGGATCCTATTGAAGTTT
TATCCCTGGCTCAGCTCCATTCTACTTATTCCACTAAATTTCCTCTCAGA
ATTAAAATTTTACACCCAGATTAAATTTTTACTATGGTAGCAGCAGCAAT
CTTTGTACTCACTAAAACTATCAACAGAGCTATCACAGGTGATGAGCAAT
TCTCCACAATAGACTCCTGTGAATACAACTGCCTTATTATGCCATTTTTG
TTTTTAAGTTCTTTTACGCCAATGTAGTTCCTACAAATGCTGCATGTTCC
CTGCCCAATCAGCGCACATTTTCGTCTATACTTTTGTAATGCGTTTATCT
ATCATACATTCCCCCTATCATTGTATCTTATAACCAACATTTTTTCTTTT
ACTTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_m13.g1 MSMg01no126_m13.g1 CHROMAT_FILE:
MSMg01no126_m13.g1 PHD_FILE: MSMg01no126_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:18 2005
         (332 letters)



>mm_chr8_38704890_38705621
          Length = 732

 Score =  642 bits (332), Expect = 0.0
 Identities = 332/332 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagacatatttaaaatgaacacacatgactataagtataatgagatgcataacatactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagacatatttaaaatgaacacacatgactataagtataatgagatgcataacatactg 260

                                                                       
Query: 61  gtatgtttaagtgatgggcagtgaaagtattgtaagaattattggtgtatgaaagaacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatgtttaagtgatgggcagtgaaagtattgtaagaattattggtgtatgaaagaacct 320

                                                                       
Query: 121 aaggccaaagcaaagcaaatttaagaagcaacagtcaataggcacttcctcttatctaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggccaaagcaaagcaaatttaagaagcaacagtcaataggcacttcctcttatctaat 380

                                                                       
Query: 181 acaggaacagaaccattaggactgtggttttaatcattgtgcatttttgttaacaacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaggaacagaaccattaggactgtggttttaatcattgtgcatttttgttaacaacatg 440

                                                                       
Query: 241 ttagttcacattgccttcaccatagggatcctattgaagttttatccctggctcagctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagttcacattgccttcaccatagggatcctattgaagttttatccctggctcagctcc 500

                                           
Query: 301 attctacttattccactaaatttcctctcaga 332
           ||||||||||||||||||||||||||||||||
Sbjct: 501 attctacttattccactaaatttcctctcaga 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)