Query= MSMg01no126_o19.b1 MSMg01no126_o19.b1 CHROMAT_FILE:
MSMg01no126_o19.b1 PHD_FILE: MSMg01no126_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:29 2005
(362 letters)
>mm_chr8_83141784_83142545
Length = 762
Score = 600 bits (310), Expect = e-176
Identities = 343/354 (96%)
Strand = Plus / Minus
Query: 5 gaattcactgactgtcccggtgtgccactttactgatggcagttgtgtactgacactcac 64
|||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||
Sbjct: 505 gaattcactgactggcatgctgtgccactttaatgatggcagttgtgtactgacactcac 446
Query: 65 tgtggtgccttccagggccttgctagacttaccacgggtttcaacagagaagtaaaaggt 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 tgtggtgccttccagggccttgctagacttaccacgggtttcaacagagaagtagaaggt 386
Query: 125 atctcttgttgcgtggcctctgcccttgttcaggatgtagtagacccgcatctcatcaat 184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctcttgttgcgcggcctctgcccttgttcaggatgtagtagacccgcatctcatcaat 326
Query: 185 gtcagctttaaacaagaacagacactgtagtaagtcacatgtgcaaaacaggaaaggggt 244
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 gtcagctttaaacaagaacagacactgtagtaagtcacatgtgcacaacaggaaaggggt 266
Query: 245 gttggcaacttgtgttccatatggtgtgggaaggtaacataacttaaatataggtgggtt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttggcaacttgtgttccatatggtgtgggaaggtaacataacttaaatataggtgggtt 206
Query: 305 gttttaaattttttatttatgtttatttatttaatgtgtgtattgtgtgtgtgt 358
|||||||||||||||||||||||||||||||||| |||||||| |||| |||||
Sbjct: 205 gttttaaattttttatttatgtttatttatttaacgtgtgtatagtgtatgtgt 152
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space: 265809
Effective search space used: 265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no126_o19.g1 MSMg01no126_o19.g1 CHROMAT_FILE:
MSMg01no126_o19.g1 PHD_FILE: MSMg01no126_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:30 2005
(539 letters)
>mm_chr8_82977391_82978329
Length = 939
Score = 826 bits (427), Expect = 0.0
Identities = 458/469 (97%), Gaps = 4/469 (0%)
Strand = Plus / Plus
Query: 1 acctaaaaagccagatgaggcggtatgcacagtgaccccagcacccctgtgataaaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctaaaaagccagatgaggcggtatgcacagtgaccccagcacccctgtgataaaatgc 260
Query: 61 aaagtggacacaggaaacatgcacaaacctggatgtagtggcacaccacgtctgtagtcc 120
||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 261 aaagtcgacacaggaaacatgcacaaacctggatgta-tggcacaccatgtctgtagtcc 319
Query: 121 tggcacaccaacaaagtttcaggaagtagaaacagaaaaattacgcagagagttgaagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tggcacaccaacaaagtttcaggaagtagaaacagaaaaattacgcagagagttgaagtc 379
Query: 181 tgggaagcctgtggtgtgcagttcagtggcagaaacaagaaagagagaaacgttgcctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgggaagcctgtggtgtgcagttcagtggcagaaacaagaaagagagaaacgttgcctca 439
Query: 241 atagggtggaagatgggaacttgaatgtcatccccagactgtgagcgcatgtgtgcgcac 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 440 atagggtggaagatgggaacttgaatgtcatccccaga-tgtgagcgcatgtgtgcacac 498
Query: 301 gaacacacacgcaaacgcacacgcgtacgcgcatgcgc--acacgcacacacacatgcac 358
||||||||||||||||||||||||| |||| ||||||| |||| |||||||||||||||
Sbjct: 499 gaacacacacgcaaacgcacacgcgcacgcacatgcgcgcacacacacacacacatgcac 558
Query: 359 acaaactgaataaatatctgattaactcataacaaaatctgtgagggtcaatactaatct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 559 acaaactgaataaatatctgattaactcataacaaaatctgtgagggtcaatattaatct 618
Query: 419 gagatgtgttcgctgctggctagaaagatagcaagaagattccactatg 467
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gagatgtgttcgctgctggctagaaagatagcaagaagattccactatg 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
