BAC Information

Click to search

BAC

Clone NameMSMg01-126P13
Chromosome8 (Build37)
Map Location 7,419,727 - 7,420,283
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665127, EG546032
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126P13.T7 (MSMg01no126_p13.b1)MSMg01-126P13.TJ (MSMg01no126_p13.g1)
ACCAG335643AG335644
length690689
length of high quality
(start - end)
559 (46 - 604)445 (73 - 517)
definitionCHROMAT_FILE: MSMg01no126_p13.b1 PHD_FILE: MSMg01no126_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:34 2005CHROMAT_FILE: MSMg01no126_p13.g1 PHD_FILE: MSMg01no126_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAGCCGCGG
AATTCTCAGTGGTTCCCCTCAAGGCTTGCTTATGTCCCACTTAAGTTACA
ACTTAATCTTCAGCAGTCAGGGGACAAGCTGAACAAATGTTATTTTCATT
GAATCCTGGAGCCTATATTGTGTCCTGTCATTTAACCTAGACTTTTGTTC
AGACAAAAAAAAGGAAGGTGGAGATTTCATTGTAAGAAATGATACCACCA
TTTCAGCTACAAAGTGACCATGACTAACTATGCAGCTCTCCAGGGCTATC
CTAGGGACTGGAGTAGTAATTGTTCCTGAAAGTCAGTAAGGATCCACATA
AGAACTTACTGACATGCTCAATTCACTTATAATGTCTCCATACTAATGGT
GCAGGCACCATGGTTTCCCCCACCTCTGTTAACTCATTAAAATATCCCAC
ACCAGAACACAGAACTAAAGTAGCCACTGGAAACTGATCTATTCAGTCAA
ATAATAAGAAAAGAAGTGACGAGAATGATGATTTTCTTTTGCAATGTTTT
GTATAGATGACATAATTGCACCAGCAATAATAACAATTATTAATTTGCAT
TAGTTTATTCTCTGACAACTTCAAAATGTTGATAATACATTCTTATCACA
TTCACCCCTCTTCCCTCTCTGACCCTTCTTCTTCCCAAAG
CATATGGGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGTTTCTCTCTATTTCCACTTTTATT
TGGGTTATTTGGTTCTCTGAAGTCTAACTTCTTTAGTTGTTTGTATATAT
TGGCTATTAGCCCACTATAGGGTGCAAGACTGATAAAGATCTTTTCCCAA
TCTGAGGGTTGCACTTTTGTCCGATTGACATATTTTTTGCAGCAGCCTCT
GCCTACAGAAGCTGTGCAATTGGTGTTTTGTTCAGGAGAATTTCCCCTGT
GCCCATGAGTTCAAGGCTTTCCCCACTTTCTCTTCTATTAGATTCAGTGT
ATCTGGTTTTATGTGGAGGTTCTCGATCTACTTGGACTTGAGCTTCGTAC
AATAAGATAAGACCGCCACCAATCTTCATTCTTCTATGTCTTGACAGCCA
GTTGAACCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCATTGGATGG
TTTTAACTCATTTCAGAATGGCAAAGATTTAAAAACTCAGGTGACAGCAG
ATGTGGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTAGG
ATTGCAAGCTGTTACAACCACTTCTAGAAATCAGTCTGGCGGCGATTCCT
CAGAAAATTGGACATACTAGTACCTGGAGGACCGGTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_p13.b1 MSMg01no126_p13.b1 CHROMAT_FILE:
MSMg01no126_p13.b1 PHD_FILE: MSMg01no126_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:34 2005
         (559 letters)



>mm_chr8_7419523_7420483
          Length = 961

 Score =  988 bits (511), Expect = 0.0
 Identities = 545/557 (97%), Gaps = 2/557 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagtggttcccctcaaggcttgcttatgtcccacttaagttacaacttaatct 64
           ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagtggctcttctcaaggcttgcttatgtcccacttaagttacaacttaatct 264

                                                                       
Query: 65  tcagcagtcaggggacaagctgaacaaatgttattttcattgaatcctggagcctatatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcagcagtcaggggacaagctgaacaaatgttattttcattgaatcctggagcctatatt 324

                                                                       
Query: 125 gtgtcctgtcatttaacctagacttttgttcagacaaaaaaaa--ggaaggtggagattt 182
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 325 gtgtcctgtcatttaacctagacttttgttcagacaaaaaaaaaaggaaggtggagattt 384

                                                                       
Query: 183 cattgtaagaaatgataccaccatttcagctacaaagtgaccatgactaactatgcagct 242
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cattgtaagaagtgataccaccatttcagctacaaagtgaccatgactaactatgcagct 444

                                                                       
Query: 243 ctccagggctatcctagggactggagtagtaattgttcctgaaagtcagtaaggatccac 302
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 ctccagggctatcctagggactggagtagtaattgctcctgaaagtcagtaaggatccac 504

                                                                       
Query: 303 ataagaacttactgacatgctcaattcacttataatgtctccatactaatggtgcaggca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataagaacttactgacatgctcaattcacttataatgtctccatactaatggtgcaggca 564

                                                                       
Query: 363 ccatggtttcccccacctctgttaactcattaaaatatcccacaccagaacacagaacta 422
           ||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccatggtatccctcagctctgttaactcattaaaatatcccacaccagaacacagaacta 624

                                                                       
Query: 423 aagtagccactggaaactgatctattcagtcaaataataagaaaagaagtgacgagaatg 482
           |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagttgccactgggaactgatctattcagtcaaataataagaaaagaagtgacgagaatg 684

                                                                       
Query: 483 atgattttcttttgcaatgttttgtatagatgacataattgcaccagcaataataacaat 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgattttcttttgcaatgttttgtatagatgacataattgcaccagcaataataacaat 744

                            
Query: 543 tattaatttgcattagt 559
           |||||||||||||||||
Sbjct: 745 tattaatttgcattagt 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 961
Length adjustment: 10
Effective length of query: 549
Effective length of database: 951
Effective search space:   522099
Effective search space used:   522099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)