BAC Information

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BAC

Clone NameMSMg01-127G19
Chromosome8 (Build37)
Map Location 87,157,659 - 87,158,030
singlet/doubletsinglet
Overlap geneCacna1a
Upstream geneGipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
Downstream geneIer2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127G19.T7 (MSMg01no127_g19.b1)MSMg01-127G19.TJ (MSMg01no127_g19.g1)
ACCAG335972AG335973
length734720
length of high quality
(start - end)
98 (58 - 155)375 (66 - 440)
definitionCHROMAT_FILE: MSMg01no127_g19.b1 PHD_FILE: MSMg01no127_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:09 2005CHROMAT_FILE: MSMg01no127_g19.g1 PHD_FILE: MSMg01no127_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCGCTAAACGACTCCTATTCCAAGAGGAGCCGCGGAATTCAGGAA
ATGGCCATGGCATTGAATCAAGTCCCTGGGCCTTCATGAGTGAGCACTGG
AGGATTGTAAGGTGAACTCTGCACAGTGGGTGGTAAAGCTCTGCATGCCT
TATTCAACCACAGGAGTTTGGGCAGCCTTCCTTTTCCATGTGCCACTTTG
TAAGGCGAGGGCCTTACTGTGAATATTTGTCAGTCCAGCTCCCAGGAAGC
TGAGACAGGAGGAACCTGACTTTGACACCAGGATAGGTCATACCCAGTTA
AGCTATTGTTTTGCTGACCATAACACTTCCATGTCCTTCATCTACATCTC
TCCACCATCATACAGTCTGCACAGTCCATGTGCCTGATGCCTATTTTTTC
CCCCCTCTTTTTCATGAATTGAATATAATGCGCACCTGCTCCTCTTGCCT
ATTCACGTTACTGCCATTCCCCTCCATTTTTAACTATCCCTCTCATTTTC
TCCCTGTCTGCGCATTCTCTTCCCGCCCTCGCTACTTCCCTTTCTGTATA
TCTCCCCCTGCTCCCCCTTGTTCCATCCTTTCTGCACTTTTCCCTCGTTT
TCCTGCTCTCTTCTCACCTTACCTCCTTTTCGTTTCTTTTCCCCTCTTCC
CCCCCTCCTTTGTCTTTTTTCCCCCGCTTTCTTGTCCTTCTACTTATTCC
TCCCCTCTTTTCCTCCTCCCTCCTTCCTCTCCTN
GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTCTTTCCTCAGCCTCCTGGGTGTGTGAGACGCCT
CATGCTGCTGAACCAGGCATTCCCAAAGGCATCTCTCACCAGAGCTGGAC
CCACCCCTTCCGAGCCCACTCCGCCCCTTTGTGCTCTCAAATAGGGCAGA
CAGAAGCCATTTGGCACTGACTACCATGTGCCTCAAGGTGCTCCATCTCT
CTCTGGCTTTTGTCAGAGAGCGGTTAGGAGGACCAGGCTCTGAAGGAGTC
AGGAAAGGGTGGTCTCCACCCTAACCCACCCACGAAGCTACAGATGGTCC
CACCCAGGCTGGGGTCCCCAAGGGAGAGGTATAAGATCCTCAGTAACTTG
TGTCCCCCCCTCCCAGAATCCTGCAAGCTCTCACCTGGCTCTCTGCTGGC
AGGCGGCTCATGGAGGCGGACCTGGCCTGGCCTTCCATGGAGAGGTAGTG
CTCGCTGTCTGAGCACCCCTCACCACCCTTTTCCCGCACCCCCATATAAC
GTCCGGCTCATGTTGGTCCATGTAGTCCCTCTTTTCCTCTCCCCCCTTCC
TTTCCTACCATCCCTCCCTTTTCCCCCTTTTCTTCCCCTTCCACCCCCTA
TTTCCCCTTTTTCCCCCCTTTATCTCTTTCTTTTCTCATTCATAACCTAA
TCCTATTTCCTCAACCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_g19.g1 MSMg01no127_g19.g1 CHROMAT_FILE:
MSMg01no127_g19.g1 PHD_FILE: MSMg01no127_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:09 2005
         (375 letters)



>mm_chr8_87157493_87158267
          Length = 775

 Score =  663 bits (343), Expect = 0.0
 Identities = 365/377 (96%), Gaps = 9/377 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctttcctcagcctcctgggtgtgtgagacgcctcatgctgctgaaccaggcattccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 538 ctctttcctcagcctcctgggtgtgtgagacgcctcatgctgctgaagcaggcattccca 479

                                                                       
Query: 61  aaggcatctctcaccagagctggacccaccccttccgagcccactccgcccctttgtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aaggcatctctcaccagagctggacccaccccttccgagcccactccgcccctttgtgct 419

                                                                       
Query: 121 ctcaaatagggcagacagaagccatttggcactgactaccatgtgcctcaaggtgctcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctcaaatagggcagacagaagccatttggcactgactaccatgtgcctcaaggtgctcca 359

                                                                       
Query: 181 tctctctctggcttttgtcagagagcggttaggaggaccaggctctgaaggagtcaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tctctctctggcttttgtcagagagcggttaggaggaccaggctctgaaggagtcaggaa 299

                                                                       
Query: 241 agggtggtctccaccctaacccacccacgaagctacagatggtcccacccaggctggggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agggtggtctccaccctaacccacccacgaagctacagatggtcccacccaggctggggt 239

                                                                       
Query: 301 ccccaagggagaggtataagatcctcagtaacttgtgt----ccccccctcccagaatcc 356
           ||||||||||||||||||||||||||||||||||||||         |  ||||||||||
Sbjct: 238 ccccaagggagaggtataagatcctcagtaacttgtgtgggg-----cagcccagaatcc 184

                            
Query: 357 tgcaagctctcacctgg 373
           |||||||||||||||||
Sbjct: 183 tgcaagctctcacctgg 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)