BAC Information

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BAC

Clone NameMSMg01-128E02
Chromosome8 (Build37)
Map Location 35,938,598 - 35,938,912
singlet/doubletsinglet
Overlap geneTnks
Upstream geneRbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578
Downstream geneLOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128E02.T7 (MSMg01no128_e02.b1)MSMg01-128E02.TJ (MSMg01no128_e02.g1)
ACCAG336577AG336578
length701728
length of high quality
(start - end)
319 (44 - 362)181 (72 - 252)
definitionCHROMAT_FILE: MSMg01no128_e02.b1 PHD_FILE: MSMg01no128_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:17 2005CHROMAT_FILE: MSMg01no128_e02.g1 PHD_FILE: MSMg01no128_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGA
ATTCTACAAAGCAGACCTGCTTTCGCTTACTCTCTTGCTCCTCTCCCCAA
GTGATCTTTCCTCCTGGTCTCCCCTGCTGTGATGCAGCCAGGGTTCCTTG
CCAGATGCTAGCCTCAAGCCACAGAATTATAAACCAAGCACACTTTTCTC
AGCATCAGTTTATAGCAGCTTAGAATAAGCTAACAGACCTCATCTGGGTC
CCTTATTGGTCTTCACGGCCTTCAACAATTGAGCCTTGTGTTGCTTTTCT
CTTCCTTTCCAGCACAAACCATTCTTGGTATGCTAACTTAAAATCATGTA
AGAGCCATCCATACCTAGCATCACGGACACATAATGACCCAACTTTCAAA
CTTTAATGGAGAAGACTGAAAGCATCCTTGAAGAACTATTTGAAGATGCT
TTAGCGTAACCTAAAAGACTACACACTTTATCCATTCCTTACGGCTTCTA
GCTGTAAGGCTTAACTACTGTACTCCACTGAATGCCCTATTGTGCAGCGC
TTTCTGAATAGGGAACTTCCCCCCACTTAGAACTATGCACCCCCATGTCA
CTATACTAATAACCTGCTACCTGGATAACCCGACACGCCATTATTATTTT
GTGGTAATGGCGGCAATTTAACTTGGCTATCAGCCTTACTAGATTTCTCT
C
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTGGACCTTAGCAAAGAGTCCTGTGCTT
ACTGGTTTTATGTCAACTTGCCACAAACTAGTTATTTTGGAAGAGGGAAC
CTCAGCAAAGACAATGTCCTCATCGGGTTTCCCTGTGGGCAAGCTTGTGG
TGCTTTCTCTTGATTGATGTGGGAAGGCCCACATCACTGTGTGTGGTACC
ACCCCTATGCTGTTAGCCCTGAGTGCTATACAGTACCAGGTTGAGCTAAC
CTGAGCTAGCCATGAGGAGTGAAGTAGTCAGCAGCCCTCCTCCAATGGCC
TCTGAGTCAGATCTTGCTTCCAGGCTCCTGCTTTGAGTTCCTGTTCCGAT
TTCCTTAGCAACGGAGTCTGAACCCATTGTAGGTTGATATAAGCTCTTCA
CTTTCCCAATTCGCCTTTGCTCACGCTGTTCATCCCAGCTACGAATCCTT
CACTAGATAAGGACTTTCTTGCTTCCTACCTGCCGACTGACCACACCCCC
CCTCGACCCAATATTAATTCTTTCTGTTGCTCAATTTTTCCCATGCCATC
ACCCCTTTATCTTCCCTAACCTTATCTCATCTCATCCATCCATGCATCCC
CTTACAATTTCCTCCCCCCCCCTTAGTAACCTATTTTTATCTTATTCTTT
TTTATCTTCTTCTTCGTTACCCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_e02.b1 MSMg01no128_e02.b1 CHROMAT_FILE:
MSMg01no128_e02.b1 PHD_FILE: MSMg01no128_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:17 2005
         (319 letters)



>mm_chr8_35938394_35939112
          Length = 719

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattctacaaagcagacctgctttcgcttactctcttgctcctctccccaagtgatct 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctacaaagcagatctgctttcgcttactctcttgctcctctccccaagtgatct 264

                                                                       
Query: 65  ttcctcctggtctcccctgctgtgatgcagccagggttccttgccagatgctagcctcaa 124
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcctcctggtcttctctgctgtgatgcagccagggttccttgccagatgctagcctcaa 324

                                                                       
Query: 125 gccacagaattataaaccaagcacacttttctcagcatcagtttatagcagcttagaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gccacagaattataaaccaagcacacttttctcagcatcagtttatagcagcttagaata 384

                                                                       
Query: 185 agctaacagacctcatctgggtcccttattggtcttcacggccttcaacaattgagcctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agctaacagacctcatctgggtcccttattggtcttcacggccttcaacaattgagcctt 444

                                                                       
Query: 245 gtgttgcttttctcttcctttccagcacaaaccattcttggtatgctaacttaaaatcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgttgcttttctcttcctttccagcacaaaccattcttggtatgctaacttaaaatcat 504

                          
Query: 305 gtaagagccatccat 319
           |||||||||||||||
Sbjct: 505 gtaagagccatccat 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)