BAC Information

Click to search

BAC

Clone NameMSMg01-128G23
Chromosome8 (Build37)
Map Location 95,262,147 - 95,424,908
singlet/doubletdoublet
Overlap geneMmp2, Aytl1
Upstream geneIrx3, 4933436C20Rik, Irx5, Irx6, LOC100041325
Downstream geneCapns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7, Gnao1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128G23.T7 (MSMg01no128_g23.b1)MSMg01-128G23.TJ (MSMg01no128_g23.g1)
ACCAG336705AG336706
length713698
length of high quality
(start - end)
267 (127 - 393)344 (129 - 472)
definitionCHROMAT_FILE: MSMg01no128_g23.b1 PHD_FILE: MSMg01no128_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:31 2005CHROMAT_FILE: MSMg01no128_g23.g1 PHD_FILE: MSMg01no128_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,262,147 - 95,262,413)(95,424,570 - 95,424,908)
sequence
TCATAATTTGCGGCCGGAATACGACTCCTATATTCCGAGAATGCGCGGAA
TTCTCTCTATGTTTCTTGACATCTAATCTATTGAGGTTGGATTGTTGGAA
TTAATGGGATTACTGTTCCACTGCGAGGTCACCAGCTGACCTTGTTAATG
AAATCCAGAGAGGGAAAGTGAGTGTTCCAAGACCAGGGGCGGGGGGTGGG
GGGTCAGGCTGAAGTCCAGGGCCAGATCTGAATCCCTCTGAAAGCAGTCA
GCCCTGGCAGTCTTGAATGAGACAATACTTTCCTTAGACTGTTTAGACTC
TTTCTGACACTTGCCTTCCCTCCTTTGATGAGCTTGGGGATGCCTTCACA
CACTCAGCAGAGGCTCCACTTCTGAGCCCTCTTCCCTCAGAGTGTAGAAC
TGGGTGCAGAATTCTCTTCTTGAGAACACATGCAAATAGAATGCAAAATT
CAGTAGTCTGCCCTTTGGCCTCTTGCTCATCTTTAGAAGAGAAATTTCCA
TTCCGATCTTTCGCTCATTTACAGTCAGGTTCCTCTCCTTTTCATTGTTG
CATTTACGGTACTCTTTATATATGCTAGCTATACATTTTTCACCTCACAC
GTGTGATATATACTTATATTTTCTCCCTTTTATATCCTGCTCTTATTATT
CCTTGTTGTCCAGAACGTCTACATTTTTATTCACTTCTTTTTCTTACCTT
TTGCTTTCCCCCC
TTACGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGGTATTTGAAACAGATATTTCC
ATTCCTTTAGGAAGGTTTCCAGAACCCAATTCTTAAGAAAAACTTGGAAG
AGGGTCCAGATGCTACCATGAGAAGTTCTGAGGCCTTCTCTGTAATTAAT
ACTTTTGGCATCTTTTTGAGGTTAGCACTTACAGGAAAAAAATATTCTAT
ATGCATATGTCTCTATAGATCCCACAGTGCTGGAGTCACAGGCAGCTGTG
AGCTGCTGGTGTTGGTGTTAGAAGAGAATTCATTCTTTGCAGAACACACT
CTTGATTGCTAAGCCATCTCTCCAGCCTTAGGTGGCAAGCTTATTTAAAT
GTTTGATGGGATTCACCAGTTAAGGTATATGGTTTTGGACCTCTCTTTAT
AAAGAAGTTACAGATTTAGGTCCAAACTCATATTCTTGGCGATTATGAGA
TGGCTCGTCTTGTTAAGAGCATGTGCTTCTCTTGTATAGAAGTTTCATTC
CCAGTATTCATACTGGGTGACTCACAATCTCTGTTAACTCTTAGCTTCAG
GTATCCGATTACTTTACACACACTTTCACCCACACACTTTTCTTCACCAA
CATCATTCTTTGGTTTCTACATGTGCACACACTCTTTTTCTTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_g23.b1 MSMg01no128_g23.b1 CHROMAT_FILE:
MSMg01no128_g23.b1 PHD_FILE: MSMg01no128_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:31 2005
         (267 letters)



>mm_chr8_95261947_95262613
          Length = 667

 Score =  509 bits (263), Expect = e-149
 Identities = 266/267 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtcaccagctgaccttgttaatgaaatccagagagggaaagtgagtgttccaagaccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtcaccagctgaccttgttaatgaaatccagagagggaaagtgagtgttccaagaccag 260

                                                                       
Query: 61  gggcggggggtggggggtcaggctgaagtccagggccagatctgaatccctctgaaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggcggggggtggggggtcaggctgaagtccagggccagatctgaatccctctgaaagca 320

                                                                       
Query: 121 gtcagccctggcagtcttgaatgagacaatactttccttagactgtttagactctttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcagccctggcagtcttgaatgagacaatactttccttagactgtttagactctttctg 380

                                                                       
Query: 181 acacttgccttccctcctttgatgagcttggggatgccttcacacactcagcagaggctc 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacttgccttccctcctttgaggagcttggggatgccttcacacactcagcagaggctc 440

                                      
Query: 241 cacttctgagccctcttccctcagagt 267
           |||||||||||||||||||||||||||
Sbjct: 441 cacttctgagccctcttccctcagagt 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no128_g23.g1 MSMg01no128_g23.g1 CHROMAT_FILE:
MSMg01no128_g23.g1 PHD_FILE: MSMg01no128_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:31 2005
         (344 letters)



>mm_chr8_95424570_95425313
          Length = 744

 Score =  640 bits (331), Expect = 0.0
 Identities = 337/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttaagaaaaacttggaagagggtccagatgctaccatgagaagttctgaggccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 attcttaagaaaaacttggaagagggtccagatgctaccatgagaagttctgaggccttc 280

                                                                       
Query: 61  tctgtaattaatacttttggcatctttttgaggttagcacttacaggaaaaaaatattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tctgtaattaatacttttggcatctttttgaggttagcacttacaggaaaaaaatattct 220

                                                                       
Query: 121 atatgcatatgtctctatagatcccacagtgctggagtcacaggcagctgtgagctgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 atatgcatatgtctctatagatcccacagtgctggagtcacaggcagctgtgagctgctg 160

                                                                       
Query: 181 gtgttggtgttagaagagaattcattctttgcagaacacactcttgattgctaagccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gtgttggtgttagaagagaattcattctttgcagaacacactcttgattgctaagccatc 100

                                                                       
Query: 241 tctccagccttaggtggcaagcttatttaaatgtttgatgggattcaccagttaaggtat 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 99  tctccagccttaggtggtaagcttatttaaatgtttgatgggattcaccagttaaggcat 40

                                                  
Query: 301 atggttttggacctctctttataaagaagttacagattt 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  atggttttggacctctctttataaagaagttacagattt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)