BAC Information

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BAC

Clone NameMSMg01-128J01
Chromosome8 (Build37)
Map Location 113,154,212 - 113,154,426
singlet/doubletsinglet
Overlap geneVac14
Upstream genePkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398
Downstream geneBC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128J01.T7 (MSMg01no128_j01.b1)MSMg01-128J01.TJ (MSMg01no128_j01.g1)
ACCAG336799AG336800
length731720
length of high quality
(start - end)
215 (128 - 342)53 (157 - 209)
definitionCHROMAT_FILE: MSMg01no128_j01.b1 PHD_FILE: MSMg01no128_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:42 2005CHROMAT_FILE: MSMg01no128_j01.g1 PHD_FILE: MSMg01no128_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCGCCTTTCCGCAAAAAGGCTCGGTTTTGATTCCCGGCCAATGT
ATTATCAATCCTTTTAATTCTAACACATGAAAATTTCACACTGCCTAATA
AATCTTTAAGTATATTAAAAGAAAAAAAAGGAAATGACTTGGTTTTGGCC
TGTTTTTAAATGTTCCTCATGGAAAAGCATTTTCTAAATTCCACAGAGAT
CCAGAACCCGTGAGTCTTCTTGAATGATCAAGAACATGGGGCTATACCAC
ACACAGTTACTGAGAGTGAGTATTTGTGCCTCCCACTCCTGCCCAGAAGC
TGAGTTCTGCTTTTGCCTGTACAATGTGCAGCATCACCTGTAATGTTTAT
ACCGTTTTGGTTAGCCCACCACTTCAAAGTATAGCCAGTCTCCCTTCTAG
TCATTCTTTGATTATTGCTCCTCTCCTGTCCTTTACAGATTCCTGGACAT
TTATGTTATCATTTGTTGAGCACTTCTTCCCAGATGTCACGCTTGTTAAA
TACCTCATTCTTCTGCCTCTGAAGGAAGCTCCTGTTGTTTTACGCTGACG
CATGTATTCCACATAACTATTTATACTGTTCACCCATATTGATGAACGCC
TTTATCCTCCCCCTCCCCCCTTTTTAGTTTTCTTTTTTGTCCATTGTTAT
TATTCCTTGTCATAGTGTTTTTCTAGCTTTA
TAAAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTCTTCACTAAATGTTGAGTGAGTGTCGTC
TTGAAACTTGATATGGCACCACTAGCCAGGGACAGTGGTGGTGGAGCCAG
GTCAGGCTGCTGAGTGGATCACAACAGTCCATGAATATGACCCCATAGCA
TGGCCGCGGGGTCAGGGACTATGCCCCCAATGAAAACAGTGAAGCTAAGG
CTTGCAAGTCACATCACTGTGGACTGGCTAAAGACGTACAGTTGCCTTAC
GCAGAGGGATGTTCCATATATTGTTCTTGATAAAGATCCTTCTTGGTACT
TGCAGAATTTCACTGACACCCGAACATATGTGGAGTGTGGTGAACGTCAG
ACTCACGGCTTCCTGCGAAGACAAAAAACAAGAACCCTGGCCATGAACAG
CTTTGTCAGGCCACTGCATGCTCATCTACATCCACTCCTATGTCTCCGCC
CCTGTCCGTTGGCTCTTGCCGTTGCTTGTACGCCATCTTCTCTCCCCCCT
GGACTTGTATAGAAATGTCTGCGGCCCCCTCTTTGCACCCAGTTCTTGTC
CCCTTTGCTCGCCTTTATGAATTTTTCTCTCTCACACTTTTTTACGCCCA
CCTTATATATTGACCCATCACCTTACCGTTGTGGTTTGCCACAACACTCT
TGATTTTTACCCCCTCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_j01.b1 MSMg01no128_j01.b1 CHROMAT_FILE:
MSMg01no128_j01.b1 PHD_FILE: MSMg01no128_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:42 2005
         (215 letters)



>mm_chr8_113154012_113154626
          Length = 615

 Score =  385 bits (199), Expect = e-111
 Identities = 211/215 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaaaatttcacactgcctaataaatctttaagtatattaaaagaaaaaaaaggaaatga 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 415 tgaaaatttcacactgcctaataaatttttaagtatattaaaagaaaaaaaaggaaatga 356

                                                                       
Query: 61  cttggttttggcctgtttttaaatgttcctcatggaaaagcattttctaaattccacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cttggttttggcctgtttttaaatgttcctcatggaaaagcattttctaaattccacaga 296

                                                                       
Query: 121 gatccagaacccgtgagtcttcttgaatgatcaagaacatggggctataccacacacagt 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 295 gatccagaacccgtgagtcttcttgaaggatcaagaacatggggctataccacacacagt 236

                                              
Query: 181 tactgagagtgagtatttgtgcctcccactcctgc 215
           |||||||||||||||  ||||||||||||||||||
Sbjct: 235 tactgagagtgagtaactgtgcctcccactcctgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)