BAC Information

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BAC

Clone NameMSMg01-129B19
Chromosome8 (Build37)
Map Location 94,083,928 - 94,084,117
singlet/doubletsinglet
Overlap geneAJ237917
Upstream geneLOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l
Downstream geneLOC100041254, LOC674324, LOC100040628, Irx3, 4933436C20Rik, Irx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129B19.T7 (MSMg01no129_b19.b1)MSMg01-129B19.TJ (MSMg01no129_b19.g1)
ACCAG337204AG337205
length705705
length of high quality
(start - end)
190 (123 - 312)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no129_b19.b1 PHD_FILE: MSMg01no129_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:25 2005CHROMAT_FILE: MSMg01no129_b19.g1 PHD_FILE: MSMg01no129_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGAGAGCCGCGGAA
TTCAATGGTTCCAAAAATGCCCTGCACAGCGTACGCGGTCTTCTTGTGAT
CTTTTGAGAATGTATTTCCTGTGTGAGGAATGAGAAGCATTTGATCTGTA
TGGCTGCCCATGTAAATCACAGCTCCAGCTGCTGGAGTCCAGGAAGGCAC
CAGATTATAAGGAAATGAAGCTGGCGCTCTATTAAAACTCTCTTGTCATT
TGGACTCACTGCCTAGCAGTTGGAATGCCCCAGCCTTGTCACTGACATTC
TGTGAACAAGCATTCTGTTTTGGGTGGTGGTAAATGGATTATCTTAAATG
TTTTTTTTTTTTCGCCCCCCCCCCCCCAAGGAGAGTTTTGATATTGAGTT
GTTGGTTAGGACATTCCACAAAAATACATCATGATGAGGTAATCTCCTCA
AGTTACACCAAGAAATGTCAAAGTTGCTTATTTCTTCAGTCAGCCATTGC
AGCGTTTCCCTGACGAGTATGCTCAGAAGATTGTGTAGTAATGTCAGACT
ATTTATAGAAGCGCCTCCCAGGAATCCACTTCTCCTTGAGTTGTTTTGTG
TACTCCCCGCAGAGATTTGCTTTTCTGTGTGTTTCCCTGTTTCTAAATTG
ACTTTCTTTGAACCTGTTGTGTTTGCCCTTCTATATGGAACCCTTTTAAC
ACCCC
ACATTGACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCAAAGGAATTCTGTAGCTCAAAGCCAGCCTGGGCTA
TGTGGTAAGACCTTGTCTATAACTAAATAAATAAATAAATAAATAAATAA
ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAA
GCAGACCTCTCCAGAGATTTAATGAAACATTTCTCAGCACCCACCCCTGT
ATCTCAGTATCTCAGAAATAGCAAGTCTCTCTCTCTGTCTCTCTCTCCCT
CTCTCTCTTTCACACACACACTCTCACACACACACACACACATACACAGA
GAGAGAGAGAGAGAGACAGAGACAGAGACAGAGAGACAGAGAGACAGAGA
GAGAGTTTTCAATAAATACATGCAGAATGGCTGTTTCAAAGGTGAGATAC
AGTTGAGAAATATCAAGTAAAAGCCAAAGTCGAGGTTTTCTACTTCGGAC
CCTTTTGAAGACTGGCAAAGTAGTGTGTTAAGAAAGTGCCTAGAAGGGAG
CTGTGGTTACTGAGCACTCTGAGGCCAGGCTGCTGCCAAGCACAAGATTA
TTATTCCTTTAAGAGTGTCGTCTGTTGAGCTGAAGCGGGACACTGAACAA
AAGGGGAAGCCATGGGATGGCATTTGGGGCACCCTGAGATGTCGCTGTCT
CACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_b19.b1 MSMg01no129_b19.b1 CHROMAT_FILE:
MSMg01no129_b19.b1 PHD_FILE: MSMg01no129_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:25 2005
         (190 letters)



>mm_chr8_94083728_94084317
          Length = 590

 Score =  368 bits (190), Expect = e-106
 Identities = 190/190 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgaggaatgagaagcatttgatctgtatggctgcccatgtaaatcacagctccagctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgaggaatgagaagcatttgatctgtatggctgcccatgtaaatcacagctccagctgc 260

                                                                       
Query: 61  tggagtccaggaaggcaccagattataaggaaatgaagctggcgctctattaaaactctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggagtccaggaaggcaccagattataaggaaatgaagctggcgctctattaaaactctc 320

                                                                       
Query: 121 ttgtcatttggactcactgcctagcagttggaatgccccagccttgtcactgacattctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtcatttggactcactgcctagcagttggaatgccccagccttgtcactgacattctg 380

                     
Query: 181 tgaacaagca 190
           ||||||||||
Sbjct: 381 tgaacaagca 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)