BAC Information

Click to search

BAC

Clone NameMSMg01-130A17
Chromosome8 (Build37)
Map Location 24,113,843 - 24,282,320
singlet/doubletdoublet
Overlap geneAnk1, Nkx6-3
Upstream geneAtp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253
Downstream geneAgpat6, Gins4, Golga7, Sfrp1, LOC100040931, Zmat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130A17.T7 (MSMg01no130_a17.b1)MSMg01-130A17.TJ (MSMg01no130_a17.g1)
ACCAG337899AG337900
length718718
length of high quality
(start - end)
379 (129 - 507)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no130_a17.b1 PHD_FILE: MSMg01no130_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:40 2005CHROMAT_FILE: MSMg01no130_a17.g1 PHD_FILE: MSMg01no130_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,281,942 - 24,282,320)(24,113,843 - 24,114,130)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGATAATCGGCGGA
ATTCCGTGTGAGTTCCCATCCCATTTGGTACCCTTCAGAGATGGAGAGCT
TACGGTTTGAGGGATGGTGTTCCACGACAACAGCAAGGGGCTTTTAGATC
TTGAACTGACGAGTGCCTTGTGGGGATCTGGGTCTATAAACTCTCCTGCC
TTCTAGCATTTACAGTCTGGGTTGCTGTTCACTGCTGGCCCCAGCTGTAC
ATCTTAGTTGCCAGACTCAGTTTCTCCGGGCGCAACATCCCGTGTGGCCT
GGGCTATCCCAGTTCACGCATAGACTCTTGGACAGGCTAAGAGATGACCA
TCCAGCCATCCGTCTCTCACCGCACCCACTCCCCTCTCCCCCAGTCAATA
TGTCTCTCTCCGATGGCACCGCTAATAAATTTTCCTCTAGATTAAAAGTA
TTGATTATTTCATTTGTAAACAATAAATAAAAAGGAGGGACTTTTCACTG
CACAGGGGCTAGCGCCTGGTGCATTTTGCTGGTGAAATTTTGCTCACTGT
TGGGGGGGGTGGGCCCCTCATATGCATTCTGTCCGGCCAGTAGCATTGAT
TTCCTATTAGTCTCTCAGCACCACCCAGTAACACATCATTTCAGTACCTG
CTATTAATGGCCTTTTGACAAATAATCACCTGTAAGTCAATAAATTTCTA
TTAAACACTGTAGCTCTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCTCCCAAATTCAGCTGCTCTGTGAATGTCCTTGTTG
CCAAAACTCTTACCAGAAATTTGGCCCCGGTTAACTGTAACTTGGGCAAA
CGTGGGCAGTTTTAGTCTCATGAATCCAGAATCCCTAGATGAATTAAGCA
GAGGAAAACCATTGATCCAACGCACAGAATCCTGGGGAGGCCAGAAAGTT
CTGGGGAGGGGAGCCGAGCCAAGAGGCTATGCTTGGTTGATGGGTCAGCA
GAAATAACAAGCAGGGCGATAGCCAGTATCCCCAAGGGCCTTCAGGCTTC
TAAGAGAGGTCACATATTTTTGCTACTCCCCCCCACAGTTTGCTCTTCCT
TCCTCTTGCTAGCAGGCTACCCACCCTTCAAAGAAATTTGTGCTGGGGGA
AGAAGAGAGTTACTTGGATTGCACAATTTGTATCAGGAAACACTTTCAGA
TGCTTCCCAGTGTTGGTCAGCGCGGTGGTTTGTATATGCTTGGCCCAGGG
AATGGCGCTATTAGGAAGTACGGCCTTGTTGGTGCAGGTGTGGCCTTGCT
GGAGGAAATGTGCAACTGTAGAGTGGATTTTGAGACCCTCCTCCTAAGCC
ACTTGGTAGCCAGTCTTCTGTTGCCTTTCGATCAAGATGTATAACTTTCG
GCTCCTCCAGCCTTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_a17.b1 MSMg01no130_a17.b1 CHROMAT_FILE:
MSMg01no130_a17.b1 PHD_FILE: MSMg01no130_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:40 2005
         (379 letters)



>mm_chr8_24281742_24282520
          Length = 779

 Score =  687 bits (355), Expect = 0.0
 Identities = 373/379 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagcaaggggcttttagatcttgaactgacgagtgccttgtggggatctgggtctata 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 579 aacagcaaggggcttttagatcttgaactgacaagtgccttgtggggatctgggtctata 520

                                                                       
Query: 61  aactctcctgccttctagcatttacagtctgggttgctgttcactgctggccccagctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 aactctcctgccttctagcatttacagtctgggttgctgttcactgctggccccagctgt 460

                                                                       
Query: 121 acatcttagttgccagactcagtttctccgggcgcaacatcccgtgtggcctgggctatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 acatcttagttgccagactcagtttctccgggcgcaacatcccgtgtggcctgggctatc 400

                                                                       
Query: 181 ccagttcacgcatagactcttggacaggctaagagatgaccatccagccatccgtctctc 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ccagttcacgcacagactcttggacaggctaagagatgaccatccagccatccgtctctc 340

                                                                       
Query: 241 accgcacccactcccctctcccccagtcaatatgtctctctccgatggcaccgctaataa 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |  | ||||||
Sbjct: 339 accgcacccactcccctctcccccagtcaatatgtctctctccgatgggaaagttaataa 280

                                                                       
Query: 301 attttcctctagattaaaagtattgattatttcatttgtaaacaataaataaaaaggagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 attttcctctagattaaaagtattgattatttcatttgtaaacaataaataaaaaggagg 220

                              
Query: 361 gacttttcactgcacaggg 379
           |||||||||||||||||||
Sbjct: 219 gacttttcactgcacaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no130_a17.g1 MSMg01no130_a17.g1 CHROMAT_FILE:
MSMg01no130_a17.g1 PHD_FILE: MSMg01no130_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:40 2005
         (289 letters)



>mm_chr8_24113643_24114331
          Length = 689

 Score =  495 bits (256), Expect = e-144
 Identities = 280/288 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgctctgtgaatgtccttgttgccaaaactcttaccagaaatttggccccggttaact 60
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 201 gctgctctgtgaatgtccttgttgccaaaactcttaccagaaagtaggccccggttaact 260

                                                                       
Query: 61  gtaacttgggcaaacgtgggcagttttagtctcatgaatccagaatccctagatgaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaacttgggcaaacgtgggcagttttagtctcatgaatccagaatccctagatgaatta 320

                                                                       
Query: 121 agcagaggaaaaccattgatccaacgcacagaatcctggggaggccagaaagttctgggg 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 agcagaggaaaaccattgatccaacgcgcagaatcctggggaggccagaaagttctgggg 380

                                                                       
Query: 181 aggggagccgagccaagaggctatgcttggttgatgggtcagcagaaataacaagcaggg 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 381 aggggaaccgagccaagaggctatgcttggttgatgggtcagcagaaataagaatcaggg 440

                                                           
Query: 241 cgatagccagtatccccaagggccttcaggcttctaagagaggtcaca 288
            ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatagccaggatccccaagggccttcaggcttctaagagaggtcaca 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)