BAC Information

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BAC

Clone NameMSMg01-130I05
Chromosome8 (Build37)
Map Location 4,929,130 - 4,929,426
singlet/doubletsinglet
Overlap genenone
Upstream geneCd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359
Downstream geneLOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130I05.T7 (MSMg01no130_i05.b1)MSMg01-130I05.TJ (MSMg01no130_i05.g1)
ACCAG338248AG338249
length698702
length of high quality
(start - end)
298 (74 - 371)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no130_i05.b1 PHD_FILE: MSMg01no130_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:20 2005CHROMAT_FILE: MSMg01no130_i05.g1 PHD_FILE: MSMg01no130_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAATCCGCG
GAATTCTCTGTTTATTACTTTCCCATTTTTTAATAGTGTTATTTGGTTCT
CTAGAGTCTAACTTCTTGAGTTCTTTGTATATATTGGATATTAAACCCCT
ATCAGGTATAGGATTGATAAAAATATTTTCCCAGTCTGTGGATTGCTGTT
TTGTCCTATTGACAGTGTCCTTTGCCTTAAAGAAGCTTTGCAAACAAAAT
TGCTTATTGTTTAATTATGTAGTATAGAAGGGTATCTTAAATCTTTGTCA
CTAGTGCCAAATGGAAGGGAAACAGCTTTTCATAAAAGTACTGTAATTTT
AATGGTAGCTAATGTTTATTTACAAACAATTCATTATTAAAGTCATACTA
TAATATGTGTACTTCTTTTCCGACTATGCAAAACTTGCTGAAATAAATTG
GTTAGTTGTAGCAAAAGTAAAACAAGAAAAAGTAGCTGTTTTTAAACAAT
CTTTTATTAGACATTTTCTTCATTTACATTTCAAATGCTATCCTGAAAGC
CCCCTATACCCTCCTCCTTGCCTAGAACCCCAATCCACCCACTCCTGCTT
CCTGGTCCTGGCTTTCCCCTGCACTGGGGTATATAATCTTTGCAAAAACA
AGGGCCTCTCCTCAAAATGATGTTTGACCAGGCCATTTTCTACTATAT
CTTCCTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCATTGAACCGTATTT
TTAATGGGGTTATTTGGTTTTCTGGGTCCCAATTTCTTGAGTTGTTTATA
TATATTGGATATTAGTCCCCTATCTGATTTAGGATTGGTAAAGATCTTTT
CCCAATCTGTTGGTGGCCTTTTTGTCTTACTAACTGTGTCCTTTGTCTTA
CAAAAGCTTTGCAATTTTATGAGGTCCCATTTGTCATTCTTGATCTTACA
GCACAAGCCATTGGTCTGTTCAGGAATTTTTCTCCTGTACCCATATCTTT
GAGGCTCTTCCCAACTTACTCCTCTCTAAGCTTTGCCCCCTCTGGTATTA
TGTGGAGTTCCTTGATCCACCTACACTCGAGAAAAAAAAACAAAGAGATG
TGGGGGGGTTGATTCCCTTTCTTCTACATGATAACTACCAGTTGAGACAG
CACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTGTTCCT
TTGTCAAAGAATAAGTGACCACAGGCGTGTGGGCTCACTTCTGGATTTTC
AATTCTATTCCTTTCATCCTACTTATCTCTGTCACTGTACCAGTACTATG
TAGGTTTTAATCACAACTGCTCTGTAATACCAATCGAGATCTTGCATGGT
GA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_i05.b1 MSMg01no130_i05.b1 CHROMAT_FILE:
MSMg01no130_i05.b1 PHD_FILE: MSMg01no130_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:20 2005
         (298 letters)



>mm_chr8_4928929_4929626
          Length = 698

 Score =  545 bits (282), Expect = e-160
 Identities = 294/298 (98%), Gaps = 1/298 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattttttaatagtgttatttggttctctagagtctaacttcttgagttctttgtatata 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 202 cattttttaatagtgttatttggttctctggagtctaacttcttgagttctttgtatata 261

                                                                       
Query: 61  ttggatattaaacccctatcaggtataggattgataaaaatattttcccagtctgtggat 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 262 ttggatattaaacccctatcaggtataggattgataaaaatatttt-ccagtctgtggat 320

                                                                       
Query: 121 tgctgttttgtcctattgacagtgtcctttgccttaaagaagctttgcaaacaaaattgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgttttgtcctattgacagtgtcctttgccttaaagaagctttgcaaacaaaattgc 380

                                                                       
Query: 181 ttattgtttaattatgtagtatagaagggtatcttaaatctttgtcactagtgccaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttattgtttaattatgtagtatagaagggtatcttaaatctttgtcactagtgccaaatg 440

                                                                     
Query: 241 gaagggaaacagcttttcataaaagtactgtaattttaatggtagctaatgtttattt 298
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagggaaacagcccttcataaaagtactgtaattttaatggtagctaatgtttattt 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)