BAC Information

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BAC

Clone NameMSMg01-130K06
Chromosome8 (Build37)
Map Location 120,087,586 - 120,087,934
singlet/doubletsinglet
Overlap genePlcg2
Upstream geneCdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik
Downstream gene4632417N05Rik, Hsd17b2, Mphosph6, Cdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130K06.T7 (MSMg01no130_k06.b1)MSMg01-130K06.TJ (MSMg01no130_k06.g1)
ACCAG338341AG338342
length7051,224
length of high quality
(start - end)
---349 (469 - 817)
definitionCHROMAT_FILE: MSMg01no130_k06.b1 PHD_FILE: MSMg01no130_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:31 2005CHROMAT_FILE: MSMg01no130_k06.g1 PHD_FILE: MSMg01no130_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGTATCCGCG
GAATCACCCACTGTTTTCTCACTATAGGCCCAAATATCTTTGTATATATG
AAATCTACGGATAAGGATATTTCTCCCCATTGTCACTGCTGACTTGTAAA
TTTGACAAATTTGATAAACATTGACTGCTGACAAACTTACTGACATTGTA
TACCGTGATCTGATATATCTCCATTGCTCATAACTGCATATATAACGCCG
CCCCTCGTCTGGCATATACTATGGTGGGCACAAGCTCTTTCATCTACCAT
TTCTGCTACTTGACCAATATTATGTACTTCTCTCTACGCTGACATCCCCA
CTCTACATAAAATCTATTTTGTCTCCCCCCCCCCCCCCGCTCAACTTTAC
TGACTTTGGAGACATCAACCCCCACAAAAAAAAATAAAAACTTTACGGAT
CGGTCGCCATTCTCTTACTTCCCCTACACCACCTTACTTCTTCTTCACTT
CACCTACGTTCTCATCGTCCATACATCACTTTTACTACCTCACAGCAACC
CCTAACTCACTTCCTCTTCCTCTTATTCCCCTCCTTCCCCCTTCTTTTTC
CTTCCCTTTTCTCCCCTTCTTCCTTTTTCTTCCTTCCATTCTTCCCTTCC
CTTCCATTTTTTCCCATTCACCTCCTTTCCCATCCCATTCCTATTTTATT
TTTTT
CCGGCCCTTNNNNNACCATGTGACCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGTTCCTGAGGGNATGGNGA
AGCAGCCCTCTTCCCCTTCAAATGCCCGTTTAAATGCGCCGGTCCAGACC
CCGAAGAATGTGCAGTTTGGCTAATCCTTGGGAAGTAGTGGTCCCTAAAC
AGCTGCAAATAGCAGGGCCCTTGATCTACACAGTGAATGTAGGGGTTGCT
GAGTGCATGGGCCAGTGGCAGATACAGTGCGTGGCCCAGTTCACCCATCA
GAGTAGCTGTGTGGGGTTGGCTGCTGGTGTGCCAACCAGCACCAATAGAG
AACATAGGCACTGCTCTAGAAAGTTTTGTGAGGTTAGCCGCGTTTGGAGG
CTCTTTTCTGTCATCTTTGCCCTCAGATGCTGAGGACTACATGGTGAGAG
CCTGTCCTAACACACCCACACACACACACACACACACACACACATGCACG
CGCGCACAGGAATAGGGAGAGAGAGGGAGGGGAAGACAGACAGACAGGCA
GGCAGACAGACAGACAGTAAGAGAAGCTGCAACACTGCTTGTGTGATATT
TGGGATAATTGATTATTTCTGTCTACAAAGAGCCCTGATGTTGCTCTCTA
TCTTGCATCCTGGCTGGATGCCGGCTTGTGGGATTCAGTGAGTTCACACT
GTAAAGTGCCTAGATAGGACCTGGCTTACAGAAAAGATTCTACATTAAAT
ATTTATTGTTGCTTTTATTATAAATAGCTATGGGTGAGAGTGGGCTTTTT
TTTTTTTTTTTTCCTAAGCAGGCAGGTTTCAGGGGCTCCTTCTGGTGATG
GGTGTAGCCTTGAAGGCACCCAGGAACCCACCAGGCTTTATACTGATTGG
TTGATGATGTCCGTATAAAAACAGGTGTCACCTGCCCCTTTGGAAAAATT
GGTTTTTTGGTTGCCATTCCCAAAAGAAATCACCCTGGTTTCTGGTTGAA
CCCTTGGATGGGAATTTAATTTTCTATTTTTTTCCCCCAAAACTGATTTT
TTTTGTATTTTAATAAATCCCCTTGATGTTTTTCGCCACAAAGATGGGTT
CTTTTTTTTCCGCAGGGGGAATAAATCATCTGGCTCTTTCGCATTCAAAT
TCTTCCCTACCTTCATTTTCTTCATCTTCCTTTCCCATTTTCCCTCTTCT
CTTCTTATCCCATAATCCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_k06.g1 MSMg01no130_k06.g1 CHROMAT_FILE:
MSMg01no130_k06.g1 PHD_FILE: MSMg01no130_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:32 2005
         (349 letters)



>mm_chr8_120087386_120088134
          Length = 749

 Score =  675 bits (349), Expect = 0.0
 Identities = 349/349 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacacacacacacacacacacacatgcacgcgcgcacaggaatagggagagagaggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacacacacacacacacacacacacatgcacgcgcgcacaggaatagggagagagaggga 260

                                                                       
Query: 61  ggggaagacagacagacaggcaggcagacagacagacagtaagagaagctgcaacactgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggaagacagacagacaggcaggcagacagacagacagtaagagaagctgcaacactgc 320

                                                                       
Query: 121 ttgtgtgatatttgggataattgattatttctgtctacaaagagccctgatgttgctctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtgtgatatttgggataattgattatttctgtctacaaagagccctgatgttgctctc 380

                                                                       
Query: 181 tatcttgcatcctggctggatgccggcttgtgggattcagtgagttcacactgtaaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcttgcatcctggctggatgccggcttgtgggattcagtgagttcacactgtaaagtg 440

                                                                       
Query: 241 cctagataggacctggcttacagaaaagattctacattaaatatttattgttgcttttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctagataggacctggcttacagaaaagattctacattaaatatttattgttgcttttat 500

                                                            
Query: 301 tataaatagctatgggtgagagtgggctttttttttttttttttcctaa 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tataaatagctatgggtgagagtgggctttttttttttttttttcctaa 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)