BAC Information

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BAC

Clone NameMSMg01-130P12
Chromosome8 (Build37)
Map Location 73,863,477 - 73,864,113
singlet/doubletsinglet
Overlap geneMyo9b
Upstream geneUpf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik
Downstream gene2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130P12.T7 (MSMg01no130_p12.b1)MSMg01-130P12.TJ (MSMg01no130_p12.g1)
ACCAG338589AG338590
length721723
length of high quality
(start - end)		313 (41 - 353)637 (72 - 708)
definitionCHROMAT_FILE: MSMg01no130_p12.b1 PHD_FILE: MSMg01no130_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:01 2005CHROMAT_FILE: MSMg01no130_p12.g1 PHD_FILE: MSMg01no130_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCCATTTTTTCTGGTCAGGGGGTACCAGGGGGCAGCCATTGTGGTAAACC
CAGGTATCCAAAGTCTGCCCAACCCAGCGGTGCCCAAGAATTCTCTCACC
TATCTTGGAGTAGCCAGTGCTGGTATTTGAGTCACAGTCCTTTTTCCTTG
CAATAGGCACAGTGGTCCTTCTCTAAAGTCTTCTGGACAGATCTTTTTTT
TTTCCAGGTCTAGGTTCCCTGTTACCCAAGTACCCTGTCTGCCTATTCTC
TGGCCTATTCTCTCTTTTATGTTCCCCTACTACTGCGGCCAAAATCCTGC
TTAATTTTTTCTCCTGCCTCCCCCACCTCTTATTCTCCCTCTCTTCTTCT
TCACACTTTTCCCTCTCTTACATCTATTCCTCTGTCTTTCTCTTGGGATA
CACCTTTTCTGCCACCTTGACTAAATCTTGTAAAGCCATGGCATGTAATC
CTTCTAGTCTCTGTAACTTCCTCTTAATATCTGATGCTGATTGCCCTATA
AAAGCCATAGCAACTGAGGCTTGTTGACACTCAGAGGCCGGGTCAAAAGG
AGTATAGCATCTATAAGCTTCCATCAATCTTTCCAGAAAAACAGACATGG
GCTCTGTAGGGCCCTGCATCACCTCTCTTACCTTAGTCAAATTGGTGGGG
TGTCTCGTCGCTCTCTTTATA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTTAAGAGACAGGGACTCATGTATACCA
GGCTGGCCTGTATGTGCTATGTAGCTGAGGGTAAGTGAACTCCTGATCCT
CCAGCCTCCAGCATCCCAGTGCCAGGATGACAGGCATGCAATACCTCCTT
CCCACCCCACCCAAATCCTCCTGCCTTCGCCTTGTTCAGGCTGGGTGTGC
TTGGGCAAGTGCCACGGTATCTGGGTATGGTGTGGAAAGCTAGAGCACAC
AAGAACCCTGCTCACCATGCATGTGGCCAGGAGCTTTCAGGCCTTAGGGC
TGTGAATGCTAAACCTCTGCTGTCTCCAAGCCACACCCCAGCCCTTAACT
GCATCTCAATGCGCCTTAAAAGAAAGCAACAGAGAAACATGCAAAAATCA
CGTTTGGATACGGTGGCAAGTACCTGCAGCCCCAGCTGCTCCTAGAGCTG
AGGCAGGAGGATTCTCCGAAGATTTCTTTTTAAAGTATGTATAAATATGT
GCACACACACGAGTGCAGTGCCCATGGAGGCTAGAGGAGGGGATCCTCAA
GCTGGAATATCAGGAAGTTAGTCAACACTGTTGCTAGGAACAGAGGAGCA
AGTGTTCTCACGTGCTGAGAGATCATCCACCTGGAAGCGGATCTTTGAGC
CAGAGAGTTGGAGGCCAGCATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_p12.g1 MSMg01no130_p12.g1 CHROMAT_FILE:
MSMg01no130_p12.g1 PHD_FILE: MSMg01no130_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:01 2005
         (637 letters)



>mm_chr8_73863406_73864442
          Length = 1037

 Score = 1208 bits (625), Expect = 0.0
 Identities = 634/637 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttaagagacagggactcatgtataccaggctggcctgtatgtgctatgtagctgaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ttttaagagacagggactcatgtataccaggctggcctgtatgtgctatgtagctgaggg 649

                                                                       
Query: 61  taagtgaactcctgatcctccagcctccagcatcccagtgccaggatgacaggcatgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 taagtgaactcctgatcctccagcctccagcatcccagtgccaggatgacaggcatgcaa 589

                                                                       
Query: 121 tacctccttcccaccccacccaaatcctcctgccttcgccttgttcaggctgggtgtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tacctccttcccaccccacccaaatcctcctgccttcgccttgttcaggctgggtgtgct 529

                                                                       
Query: 181 tgggcaagtgccacggtatctgggtatggtgtggaaagctagagcacacaagaaccctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tgggcaagtgccacggtatctgggtatggtgtggaaagctagagcacacaagaaccctgc 469

                                                                       
Query: 241 tcaccatgcatgtggccaggagctttcaggccttagggctgtgaatgctaaacctctgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tcaccatgcatgtggccaggagctttcaggccttagggctgtgaatgctaaacctctgct 409

                                                                       
Query: 301 gtctccaagccacaccccagcccttaactgcatctcaatgcgccttaaaagaaagcaaca 360
           |||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||
Sbjct: 408 gtctccaagccacaccccagcccttaactgcatctcaatgtgggttaaaagaaagcaaca 349

                                                                       
Query: 361 gagaaacatgcaaaaatcacgtttggatacggtggcaagtacctgcagccccagctgctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gagaaacatgcaaaaatcacgtttggatacggtggcaagtacctgcagccccagctgctc 289

                                                                       
Query: 421 ctagagctgaggcaggaggattctccgaagatttctttttaaagtatgtataaatatgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctagagctgaggcaggaggattctccgaagatttctttttaaagtatgtataaatatgtg 229

                                                                       
Query: 481 cacacacacgagtgcagtgcccatggaggctagaggaggggatcctcaagctggaatatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 cacacacacgagtgcagtgcccatggaggctagaggaggggatcctcaagctggaatatc 169

                                                                       
Query: 541 aggaagttagtcaacactgttgctaggaacagaggagcaagtgttctcacgtgctgagag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 aggaagttagtcaacactgttgctaggaacagaggagcaagtgttctcacgtgctgagag 109

                                                
Query: 601 atcatccacctggaagcggatctttgagccagagagt 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 108 atcatccacctggaagcggatctttgagccagagagt 72


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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