BAC Information

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BAC

Clone NameMSMg01-131A09
Chromosome8 (Build37)
Map Location 31,575,374 - 31,575,622
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628189
Downstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131A09.T7 (MSMg01no131_a09.b1)MSMg01-131A09.TJ (MSMg01no131_a09.g1)
ACCAG338631AG338632
length701702
length of high quality
(start - end)
281 (369 - 649)236 (122 - 357)
definitionCHROMAT_FILE: MSMg01no131_a09.b1 PHD_FILE: MSMg01no131_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:06 2005CHROMAT_FILE: MSMg01no131_a09.g1 PHD_FILE: MSMg01no131_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACTCATAATTTGCGGCCGTAAACGACTCACATCGGAGTGGATCCGCGGA
ANNCNCATTGCAGAATGGGGAAGGGCAGAGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCACCCAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGTTT
TTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAA
AACTGGATATAGTACNATCGTTTGATCCAGCATACCTCTCCTGGGCATAT
ATCCTGAATATGCCCCCCCTGGTAAGAAGAACACATGCTCCACTATGTTC
ATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATGTGATACATCTACACAATGGAGT
ACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGG
ATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAA
CTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGG
ATATCCTTGATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAAA
C
CCCCCAATACAGTGGGAGGCCTGGCGGCCGCCTTCAAAAGAATTTAGGTG
ACCTATAGATGCCACAGAAGAATTAACTATGATCTGTCTTTTAACCCTAA
AGACCTAATATAATTTAAACACTATTGCCCTCTTTTCTGTCAGCACACAC
ACACACACACACACACACACACACATACACACACACACACACTGTGCTTT
CTAAAATAAAATTCCACACTTGACTTCATATCATGGCTCTCATCTCTATA
AACTTGGACTGAATGATGAACACTTTAAGATTTTAGTTTTTCCTATTTTA
TTTAGGTCAAGAAAACATCTGCCATTTCATTGAAACTGTTCTTCTCAAAG
TCATGATTGTTTTTCGCCACCCTCCCTATGGTAAGTTTGTTTCCATAATC
TGGACTTTTTCATGACACTACCATGAAGTGGTGGTTTGAATGAGAAATGT
TCCCTGCAGTCCAGGGCATTTGAATATTTGGTCCTCAGTTGGTGGTGAGT
TTGAAAAGGTTTAGGTGCTGAGGGCTAGCTGATGGAAGTAAGTCACTGGG
GAGTTGTTTTGATATTTAAAGCCCCCATTCATTCCATTCCCAGTTTTCTC
TCTGTATTTCATCCTTGAAGATATGAGCTCTCAGTTTCCTGTCCTGCCCA
CTATGCCAGCTGCTTATTGCCATATGCTTCCTCTCTGTCATAATAGATTT
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_a09.g1 MSMg01no131_a09.g1 CHROMAT_FILE:
MSMg01no131_a09.g1 PHD_FILE: MSMg01no131_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:06 2005
         (236 letters)



>mm_chr8_31575188_31575823
          Length = 636

 Score =  416 bits (215), Expect = e-121
 Identities = 234/249 (93%), Gaps = 14/249 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctattgccctcttttctgtcagcacacacacacacacacacacacacacacacatacaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 187 ctattgccctcttttctgtcagcacacacacacacacacacacacacacacacacacaca 246

                                                                       
Query: 61  cacacacaca--------------ctgtgctttctaaaataaaattccacacttgacttc 106
           ||||||||||              ||||||||||||||||||||||||||||||||||||
Sbjct: 247 cacacacacatacacacacacacactgtgctttctaaaataaaattccacacttgacttc 306

                                                                       
Query: 107 atatcatggctctcatctctataaacttggactgaatgatgaacactttaagattttagt 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atatcatggctctcatctctataaacttggactgaatgatgaacactttaagattttagt 366

                                                                       
Query: 167 ttttcctattttatttaggtcaagaaaacatctgccatttcattgaaactgttcttctca 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttttcctattttatttaggtcaagaaaacatctgccatttcattgaaactgttcttctca 426

                    
Query: 227 aagtcatga 235
           |||||||||
Sbjct: 427 aagtcatga 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)