BAC Information

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BAC

Clone NameMSMg01-131A23
Chromosome8 (Build37)
Map Location 70,004,919 - 70,005,554
singlet/doubletsinglet
Overlap genenone
Upstream gene1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440, LOC665453
Downstream geneNat1, Nat2, LOC100041265, Nat3, Psd3, Sh2d4a, LOC665510, 4732435N03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131A23.T7 (MSMg01no131_a23.b1)MSMg01-131A23.TJ (MSMg01no131_a23.g1)
ACCAG338658AG338659
length713704
length of high quality
(start - end)
631 (79 - 709)222 (136 - 357)
definitionCHROMAT_FILE: MSMg01no131_a23.b1 PHD_FILE: MSMg01no131_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:09 2005CHROMAT_FILE: MSMg01no131_a23.g1 PHD_FILE: MSMg01no131_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAACGGAGCCG
CGGAATTCTACCCTTACCTGAATGGCGAGTTCTAAAGTTGTTCAGAAAGC
TCTGTGGGTCATTCTCGAAAACTACCGGTGTAAGGTGTAAATGTCTTACA
GAGCGCTGGTGGGTGTAAGGAAGAGATTCTCAACCTGTAGGTCACGACCC
CCTTGGGGTTGCTGAGCGACCTTTTTACTGGGGTGGCTTAAAAGCATTGG
AAAGCACTGCTATTTACGTTACGATTCACAACAGTAGCAAGATTACAATT
AAGAAGTAGTAATGACATTAATTTTATGGCTGGAACAGCACATCACGAGG
AACTGTATTAAAGGTTTGCAGCATTGGAAGGTTGAGAACCACTGGTATAA
GAGTGGCTCAAACTATCCGGCATAGCTAGGACACATTTTACCAGTGAGAA
TTTGAGGAAGTCTCTTTAGATTGTCTAAAACTGTCTCCTAACAGTAAAAT
GAGAGCTAATGATGGTGGCTGCTTAAAAGGCGTGTTGTGAGAATTAAGTA
TGTATGTTAACAGAGAGCTGCTACAACTGTATTTCCCTCAGGGGATCTTT
TGACATTGATATCTACTAGTCCTCTGTCCTCAGCAGGCCAAGTCCCAAAG
GGTATAGTTAACAGTGCAGGGGACAGACTGATAATACTTATTGCTCAATT
TGCACTAGCTGAG
CAACCATGAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCAGAAAAATTCTCACCTGAGGAATACCGAATGGCAGA
GAAGCACTTGAAAAATTTTACANAACAAAAGAGCTCAAGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCACAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCATTTTACTGGACATAGTACTACCGGAGGATCCAG
CAATATTTCTTCTGCGCCCCCCCCCCGAAGATGCCCCAACAGGTAAGAAG
GACACATGCTCCACTATGATAATAAAAAACTTATTTATGGTGGGCAGAAG
CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGAAACTCACTCAATATGTATTCACTGATAAGTG
GATTTTAGGCCCCAACCTAGGAATACCCACATATAAGAAATAATTTGTTT
AACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_a23.b1 MSMg01no131_a23.b1 CHROMAT_FILE:
MSMg01no131_a23.b1 PHD_FILE: MSMg01no131_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:09 2005
         (631 letters)



>mm_chr8_70004724_70005754
          Length = 1031

 Score = 1168 bits (604), Expect = 0.0
 Identities = 626/636 (98%), Gaps = 5/636 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttctaaagttgttcagaaagctctgtgggtcattctcgaaaactaccggtgtaaggtgt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 196 gttctaaagttgttcagaaagctctgtgggtcattctcgaaaactaacggtgtaaggtgt 255

                                                                       
Query: 61  aaatgtcttacagagcgctggtgggtgtaaggaagagattctcaacctgtaggtcacgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaatgtcttacagagcgctggtgggtgtaaggaagagattctcaacctgtaggtcacgac 315

                                                                       
Query: 121 ccccttggggttgctgagcgacctttttactggggtggcttaaaagcattggaaagcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ccccttggggttgctgagcgacctttttactggggtggcttaaaagcattggaaagcact 375

                                                                       
Query: 181 gctatttacgttacgattcacaacagtagcaagattacaattaagaagtagtaatgacat 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gatatttacgttacgattcacaacagtagcaagattacaattaagaagtagtaatgacat 435

                                                                       
Query: 241 taattttatggctggaacagcacatcacgaggaactgtattaaaggtttgcagcattgga 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 taattttatggctgggacagcacatcacgaggaactgtattaaaggtttgcagcattgga 495

                                                                       
Query: 301 aggttgagaaccactggtataagag-----tggctcaaactatccggcatagctaggaca 355
           ||||||||||||||||||||||| |     |||||||||||||| |||||||||||||||
Sbjct: 496 aggttgagaaccactggtataagggatgcctggctcaaactatctggcatagctaggaca 555

                                                                       
Query: 356 cattttaccagtgagaatttgaggaagtctctttagattgtctaaaactgtctcctaaca 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cattttaccagtgagaatttgaggaagtctctttagattgtctaaaactgtctcctaaca 615

                                                                       
Query: 416 gtaaaatgagagctaatgatggtggctgcttaaaaggcgtgttgtgagaattaagtatgt 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gtaaaatgagagctaatgatggtggctgcttaaaaggcgtgttgtgagaattaagtatgt 675

                                                                       
Query: 476 atgttaacagagagctgctacaactgtatttccctcaggggatcttttgacattgatatc 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 atgttaacagagagctgctacaactgtatttccctcaggggatcttttgacattgatatc 735

                                                                       
Query: 536 tactagtcctctgtcctcagcaggccaagtcccaaagggtatagttaacagtgcagggga 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tactagtcctctgtcctcagcaggccaagtcccaaagggtatagttaacagtgcagggga 795

                                               
Query: 596 cagactgataatacttattgctcaatttgcactagc 631
           ||||||||||||||||||||||||||||||||||||
Sbjct: 796 cagactgataatacttattgctcaatttgcactagc 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)