BAC Information

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BAC

Clone NameMSMg01-132M24
Chromosome8 (Build37)
Map Location 73,236,477 - 73,394,860
singlet/doubletdoublet
Overlap gene2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124
Upstream gene1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1
Downstream geneSlc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132M24.T7 (MSMg01no132_m24.b1)MSMg01-132M24.TJ (MSMg01no132_m24.g1)
ACCAG339953AG339954
length708704
length of high quality
(start - end)		616 (75 - 690)611 (70 - 680)
definitionCHROMAT_FILE: MSMg01no132_m24.b1 PHD_FILE: MSMg01no132_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:26 2005CHROMAT_FILE: MSMg01no132_m24.g1 PHD_FILE: MSMg01no132_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,236,477 - 73,237,092)(73,394,486 - 73,394,860)
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCGG
AATTCCAGCCAAATTGCAGGAGATCAGAGAGGCAAGGTACAGGCTCCAGG
GGCATCTGGAGAGAACATGCCCAACTGGTCTTCAGCGCACGCTCCCCAAG
TTCCAACAGCCCACTCTGGGACTTGGGCCCCTCCTCTCTAGCAGCACCAG
CCTAGCCTCAAATCTCCACTGGGACTCAGATAGTGGGTCTGACTATAGTA
CTGGGGACCTGACTGAGGGACTGTCCCAGGACTCAACCTGGCATAGGAGG
AGTCAGGTTCAGGCCAGGGACCAGAAACCAAATGGGGTCACTTTCCTGGA
TCCTGTCCAACCCAAAGACAAACTGGCTCATGGGGGAGCCCCAAGCCCTG
GCCAGGCACGCAAGACCAGCGAGGGATCTCAATTCCTAAGCCAACCATTA
GAGGCCAGGGGGCTGTATCCAAGCTCATCTCAGTCTGCAGGGTCCAGTGC
TGTGGCCCCAAGCCTGGCTCAGCCATCCACGGGCACTGGGGTAGCCCCAA
GCCTGGCCCATCCATCTGCGGCCACTAGGGTGTCCCCAACCTTAGCCCAG
CCATCCATGGACACTGGGGTGTTCCCGGGCCTGACAGAACCACTGATATA
TTATGGGTCACCTACAAATTTTAGTCAACCATTTATGTACACTGGAGGGT
CCCCAGTC

TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCATGGTGAATAGTCTGTTAACCGGAAATACC
TCCAGGGACAGGCAGAGGCGAAGTAGCTCAGGAGCTGGAGCAAGGAACGG
AAGTGACAGCTGATAGGATTGGAGTCTTCTGGAGTACGCAGTGTTGGTCT
TTGCACAACGTTGTAATTATAGTTTTAAAAAAATTATTTCAGTAGGCTGG
AGAGATGGCTCAGTGGTTAAGAGCACAAGGTCCTGAGTTCAGTTCCCATC
AACCACATGGTGGCTCACAACCATCTGCAATGGCACCCGGTGCCCTCTTC
TGGTGTGTCTGAGAAGAGCGACAGTGTACTCACATACATAAAATAAATAA
ATCTTTTAAAATTAACCACTTTTTCAAGACACCCTGGCTATCCTGGAACT
TACTCTGTAGACCAGGCTGGTCTTGAACTCAGAAACCCGCCTGCCTCTGC
CTCCCAATGCTGGGATTAAAGGCGTGTGCCACCACCGCCCAGCAATAAAT
CTTTTTTAAAAAATTGTTCAAAAGCCTCAGAAGAAACACAACAGTAGAGC
CCCTTCCTAGAATCACCAGGGAGGGGTGAGGACATGGCTCAGGGCTAGAG
CCCCTGTCCTCCAGTGTGGAGGTTCAGGTGGAGCTCCCTCCGCCCTGTGG
AGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_m24.b1 MSMg01no132_m24.b1 CHROMAT_FILE:
MSMg01no132_m24.b1 PHD_FILE: MSMg01no132_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:26 2005
         (616 letters)



>mm_chr8_73236277_73237292
          Length = 1016

 Score = 1183 bits (612), Expect = 0.0
 Identities = 615/616 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagaggcaaggtacaggctccaggggcatctggagagaacatgcccaactggtcttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagaggcaaggtacaggctccaggggcatctggagagaacatgcccaactggtcttca 260

                                                                       
Query: 61  gcgcacgctccccaagttccaacagcccactctgggacttgggcccctcctctctagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgcacgctccccaagttccaacagcccactctgggacttgggcccctcctctctagcag 320

                                                                       
Query: 121 caccagcctagcctcaaatctccactgggactcagatagtgggtctgactatagtactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caccagcctagcctcaaatctccactgggactcagatagtgggtctgactatagtactgg 380

                                                                       
Query: 181 ggacctgactgagggactgtcccaggactcaacctggcataggaggagtcaggttcaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacctgactgagggactgtcccaggactcaacctggcataggaggagtcaggttcaggc 440

                                                                       
Query: 241 cagggaccagaaaccaaatggggtcactttcctggatcctgtccaacccaaagacaaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagggaccagaaaccaaatggggtcactttcctggatcctgtccaacccaaagacaaact 500

                                                                       
Query: 301 ggctcatgggggagccccaagccctggccaggcacgcaagaccagcgagggatctcaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 ggctcatgggggagccccaagccctggccaggcacgcaagaccagtgagggatctcaatt 560

                                                                       
Query: 361 cctaagccaaccattagaggccagggggctgtatccaagctcatctcagtctgcagggtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctaagccaaccattagaggccagggggctgtatccaagctcatctcagtctgcagggtc 620

                                                                       
Query: 421 cagtgctgtggccccaagcctggctcagccatccacgggcactggggtagccccaagcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtgctgtggccccaagcctggctcagccatccacgggcactggggtagccccaagcct 680

                                                                       
Query: 481 ggcccatccatctgcggccactagggtgtccccaaccttagcccagccatccatggacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcccatccatctgcggccactagggtgtccccaaccttagcccagccatccatggacac 740

                                                                       
Query: 541 tggggtgttcccgggcctgacagaaccactgatatattatgggtcacctacaaattttag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggggtgttcccgggcctgacagaaccactgatatattatgggtcacctacaaattttag 800

                           
Query: 601 tcaaccatttatgtac 616
           ||||||||||||||||
Sbjct: 801 tcaaccatttatgtac 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no132_m24.g1 MSMg01no132_m24.g1 CHROMAT_FILE:
MSMg01no132_m24.g1 PHD_FILE: MSMg01no132_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:26 2005
         (611 letters)



>mm_chr8_73394486_73395496
          Length = 1011

 Score =  694 bits (359), Expect = 0.0
 Identities = 371/375 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggtgaatagtctgttaaccggaaatacctccagggacaggcagaggcgaagtagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 375 catggtgaatagtctgttaaccggaaatacctccagggacaggcagaggggaagtagctc 316

                                                                       
Query: 61  aggagctggagcaaggaacggaagtgacagctgataggattggagtcttctggagtacgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aggagctggagcaaggaacggaagtgacagctgataggattggagtcttctggagtacgc 256

                                                                       
Query: 121 agtgttggtctttgcacaacgttgtaattatagttttaaaaaaattatttcagtaggctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agtgttggtctttgcacaacgttgtaattatagttttaaaaaaattatttcagtaggctg 196

                                                                       
Query: 181 gagagatggctcagtggttaagagcacaaggtcctgagttcagttcccatcaaccacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gagagatggctcagtggttaagagcacaaggtcctgagttcagttcccatcaaccacatg 136

                                                                       
Query: 241 gtggctcacaaccatctgcaatggcacccggtgccctcttctggtgtgtctgagaagagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gtggctcacaaccatctgcaatggcacccggtgccctcttctggtgtgtctgagaagagc 76

                                                                       
Query: 301 gacagtgtactcacatacataaaataaataaatcttttaaaattaaccactttttcaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||
Sbjct: 75  gacagtgtactcacatacataaaataaataaatcttttaaaattaattattttttcaaga 16

                          
Query: 361 caccctggctatcct 375
           |||||||||||||||
Sbjct: 15  caccctggctatcct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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