BAC Information

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BAC

Clone NameMSMg01-133F12
Chromosome8 (Build37)
Map Location 66,896,467 - 66,896,568
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384831, EG244495, Tll1, LOC100040989
Downstream geneCpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133F12.T7 (MSMg01no133_f12.b1)MSMg01-133F12.TJ (MSMg01no133_f12.g1)
ACCAG340349AG340350
length711721
length of high quality
(start - end)
232 (121 - 352)102 (152 - 253)
definitionCHROMAT_FILE: MSMg01no133_f12.b1 PHD_FILE: MSMg01no133_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:08 2005CHROMAT_FILE: MSMg01no133_f12.g1 PHD_FILE: MSMg01no133_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACGAAATTCCTAGGCAAATGAATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACCTATTTTCACCGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGC
TAAACGCATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTGC
CCTTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACA
AAGTTTGGAGCTGTCTTGAAAGGAGGGACCATCTAGAGACTGCCATATCC
TTTGATCCATCCCCCCCCCACCCCCCAAATGCTGACACCATTGCATACAC
TAACAAGATTTTGCTGAAAGGACACAGATATAGCTGGCGCTTGTGAGACT
ATTCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGA
ATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGC
TAAAGGGATCTGTAACCCTATAGGTGGAACAACATTATGAACTAACCAGT
ATCCCGGATCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGT
CGGCCATCAATGGAAAGAGAGGCCCATTGGACAAGCAAAATTTATATGCT
CCAGTACAGGA
CAATACAGTGGGAGGCCTGGCGAACGCCTGTTTCACAAGGGGXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGTTGCTTGCGGGGGGAAAAATCCATT
TTGGTAGCATAACTGATTAACCTTCTAAATGGTGAGATGGTGTTCATCAC
AATTCAAGCTATTTCTCATTTCAAGATAATGTGCTATCTGTAATATAGTC
TACATTTCTTACCCCCTGACTTTGTTTATACACTTACATTTCTTTTTCAG
TTCCAGGAAACGGCTTATATGGCTCACCCACATAAAATAAAAATAAGTAA
CATACAATGACATTGACTATCATGAATGAACAACAAGGATTTAATGATAG
AGAGAGATTACAGAAAGGACTAAACTTTTGCAGGCACGAATACGGTAACA
GGTTCATTATTTCAGCTCTTCTCTACTCCTATAACAACCTCATGAATCTG
AACTACTCATATCATATCAATCTCGAACAGCACCCTTTGTCTACACTGCA
CTGCCTTGTTCTTTTGCCGTATGTCTCCATTTATACCATTACCCTCACCC
TATTCCTCTGACAAGGCTCGCATATATTTTATCACTTACGTCTTATCAAC
TTTCCTGCTTCACGTCGTCTATCCACCACCTCACTCCCTTCTCTATTTTT
TCTACCTCCCCCTTTTTCTAGTCTTCTACCTTTCTTCTAATACTCCCCTC
TCACCTCTCATGTACCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_f12.g1 MSMg01no133_f12.g1 CHROMAT_FILE:
MSMg01no133_f12.g1 PHD_FILE: MSMg01no133_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:08 2005
         (102 letters)



>mm_chr8_66896267_66896768
          Length = 502

 Score =  190 bits (98), Expect = 3e-53
 Identities = 101/102 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcaagctatttctcatttcaagataatgtgctatctgtaatatagtctacatttctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 attcaagctatttctcatttcaagataatgtgctatctgtaatatagtctacatttctta 243

                                                     
Query: 61  ccccctgactttgtttatacacttacatttctttttcagttc 102
           ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 242 ccccctgactttgtttatacagttacatttctttttcagttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 502
Length adjustment: 8
Effective length of query: 94
Effective length of database: 494
Effective search space:    46436
Effective search space used:    46436
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)