BAC Information

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BAC

Clone NameMSMg01-133G18
Chromosome8 (Build37)
Map Location 37,110,539 - 37,110,999
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641
Downstream geneD8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133G18.T7 (MSMg01no133_g18.b1)MSMg01-133G18.TJ (MSMg01no133_g18.g1)
ACCAG340406
length692705
length of high quality
(start - end)
---475 (44 - 518)
definitionCHROMAT_FILE: MSMg01no133_g18.b1 PHD_FILE: MSMg01no133_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:14 2005CHROMAT_FILE: MSMg01no133_g18.g1 PHD_FILE: MSMg01no133_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCGGAGTT
CGCTACCTTTCCCCAAAAAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TGAAGTGCGAGGCTGGCGGCGCCTGTTCACAAAGTGAGGTGAACTATAGA
ATTTCCGCGGAATTCCATGGGGTGTTTCTTCAGCTTGACTGCATATGAAA
ATCATCTTGGGAAAAAACGTTATTGTTGTTGTTGTTGTTGTTCTAGACAG
GGTTTCTCTAGGTAGCCTTGGCAGTTCTAGGAGTTGCTCTGTAGACCAAG
CTTGTCTGCAACCCAGTGATTGCATCCCAAGTACTGGGATTAAAGGCATG
AACCACCACCATTGGGCTTGAAGAAGCTTTGAAGATACTGGTTGTGGATC
CAGTCTTTGATGTTTGACTTCAGGTGATCTGGCTTGCAGCTTTGGCTCTG
GGTTTTCCAGGTACAGCCGAGTTTGAGAGTTTGAGTCAGACGCTGGGGCA
AACGCACAGGTCAGTGGTTTTCAAAGCTCAAGGCACCTCAGAATAGCCCG
AGGGCACGAGAAACAGTTTCCTGGAGATCTGCTGCAGAGTTCCGGATTCT
GTAGGGCAGGGTGGGGCATAACAGGCAGGGCAGGTTGGTGTAGGGTAGGC
TGTAGTTTTTTTTAAAACACACTCCTTAGGGTGGTCCTGGGCCTCTGGAA
TAACCCACAGTTTGACTGCTGATGTGATGGTTAATTTGGATGGTCAGCTT
GATTACATTAACAAAGACCTATGGCACCATTGAATCACATCTTTGGGCAA
ATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_g18.g1 MSMg01no133_g18.g1 CHROMAT_FILE:
MSMg01no133_g18.g1 PHD_FILE: MSMg01no133_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:14 2005
         (475 letters)



>mm_chr8_37110209_37111083
          Length = 875

 Score =  861 bits (445), Expect = 0.0
 Identities = 457/461 (99%), Gaps = 2/461 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattc-catggggtgtttcttcagcttgactgcatatgaaaatcatcttgggaaa-aaa 74
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 791 gaattcacatggggtgtttcttcagcttgactgcatatgaaaatcatcttgggaaagaca 732

                                                                       
Query: 75  cgttattgttgttgttgttgttgttctagacagggtttctctaggtagccttggcagttc 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cgttattgttgttgttgttgttgttctagacagggtttctctaggtagccttggcagttc 672

                                                                       
Query: 135 taggagttgctctgtagaccaagcttgtctgcaacccagtgattgcatcccaagtactgg 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 taggagttgctctgtagaccaagcttgtctgcaacccagtgattgcatcccaagtactgg 612

                                                                       
Query: 195 gattaaaggcatgaaccaccaccattgggcttgaagaagctttgaagatactggttgtgg 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gattaaaggcatgaaccaccaccattgggcttgaagaagctttgaagatactggttgtgg 552

                                                                       
Query: 255 atccagtctttgatgtttgacttcaggtgatctggcttgcagctttggctctgggttttc 314
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atccagtctttgaggtttgacttcaggtgatctggcttgcagctttggctctgggttttc 492

                                                                       
Query: 315 caggtacagccgagtttgagagtttgagtcagacgctggggcaaacgcacaggtcagtgg 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 caggtacagccgagtttgagagtttgagtcagacgctggggcaaacgcacaggtcagtgg 432

                                                                       
Query: 375 ttttcaaagctcaaggcacctcagaatagcccgagggcacgagaaacagtttcctggaga 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttttcaaagctcaaggcacctcagaatagcccgagggcacgagaaacagtttcctggaga 372

                                                    
Query: 435 tctgctgcagagttccggattctgtagggcagggtggggca 475
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tctgctgcagagttccggattctgtagggcagggtggggca 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)