BAC Information

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BAC

Clone NameMSMg01-134C14
Chromosome8 (Build37)
Map Location 45,019,885 - 45,020,471
singlet/doubletsinglet
Overlap genenone
Upstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
Downstream geneLOC100039508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134C14.T7 (MSMg01no134_c14.b1)MSMg01-134C14.TJ (MSMg01no134_c14.g1)
ACCAG340943AG340944
length1,2151,241
length of high quality
(start - end)		772 (55 - 826)733 (92 - 824)
definitionCHROMAT_FILE: MSMg01no134_c14.b1 PHD_FILE: MSMg01no134_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:18 2005CHROMAT_FILE: MSMg01no134_c14.g1 PHD_FILE: MSMg01no134_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCAATTTTTTTTNTNTACAGTGGGCGCTNXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATTCAGAACATATAATCCTTTTAAGCATAGTCATCC
CTTGGTAACCATCAGAAATTGCTTCAGGGATACTAAACTTACCATATGTT
TAAATCCTTTTTTTACAATGATGGAGAATTTGAATATAACATATATACAC
CCATTCCATGCTTATGATCATGTGTCAAGCCAACCAAATACAGCGCATTA
AATAAGTAGATTTGTGTTGCTTAGGAATAATAGAAACAGTACATTCATTT
CAGTTTAGATAAAATTTCCTTTTTGAATATTTCAACTTTTGTTTGGCATG
TACTAATGAAGAATATACACATATTCAAGGCCAGCAACACAGAGAGAAAG
ACACAGACACAGACACACATGCACACACACAAACACACATGCAGATATGC
AGCTATTGCAAAGTACATAAATACTTAAATCAGACATTGCATATTTTCAT
TCATATGTGGATGCTCTCTTTGAATATTCATGTATGAGTGTTTAATTAAA
TTGGTATAGTCAAAAAAGGCATGACACTAATAAGGAGCCATCATGGAGGT
CTTTTAAGAAAGGAAAAATATGTCACAGATGGTATGAAAAGAGGAAGACT
TCCTGTAGGGGCAGTAATGCCTTCAGGCTGCTGGAGGGGTGTTTAGTTCT
CTTAAGGCAGAGCTAGCTAATGGCAACTCAGGAGGCTGAGACATGTCATA
AATCTATAGGAATTCACAGTGCCAATATAGCAGAGAATGTAATATAATGC
TTAGAGACTGTATCTTCATTCTCCTAATGATTCCATCAAGGATTCAGGCC
CGAAAGACACCACAATACCCCTGGTCTGCAATTCTGTGCTACTTTATTCT
GCCCTGGAGAAATCTCTTTCTGCTTCTTCCCGGAAATTGGGGGCCAAAAA
TTTTCCCTGTCTGACTCATTCTTAATAGAAAAAAATTATTTTATTTCCCC
GCCGTTAAATGGTGGGTTTAATGTTAAAAGGGGTGTCCCCTTTCCCTAAC
TAAAATTTCCTAATTTCTCTTTTCCTCCCTGGTATTTCTTAAATCAATAT
TCTTTTTCTTTTATAATTGAGTGGTGTAAATTCTACCTCAAATCTTTTCT
TTAATGTGGTGCTTGTGCCCAATTTTTTTTTTATTCTAATATTTATGTTC
TCATCTTTTATTTCT

NNCCTTGTTTTTTTTTTTACCATGTGAGGCTGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCACCTGAGGAATAC
CGAATGGCAGAGAAGCACTTGACAAAATGTTCAACATCCTTAATCATCAG
GGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAA
TGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGA
GAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACC
ACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTAC
CGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCA
ACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTAT
AATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGA
TACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAA
AAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCAT
CATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATT
CACTGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGA
TATAATTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTG
GACACTATGCCCCTCCTTAGATTTGGGAACAAAACACCCATGGAAGGAGT
TACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGAC
TGCCATATCCAGGGATCTACCCCATAATCAGCATCCAACGCTGACACCAT
TGCTTACACTAGCAAGATTTTATTTGAAAGGACCCACATGTAGCTGTCTC
TTGTGAAAATATGCCGGGGCCCTAACAAAACAAAAAATGGATGCTCCCAC
TCTGCTATTGGATGGATCATAAGGGCTCCCCTGGGAGGGAATTTAAAAAA
GATACCCAAGGACCTAAAGTGATCTTGCCCCCCTATTTTTTGTGAGATCT
TTTTTTATTAAACTAATTCCCCCGGACTCCTTGTCTCTTGGTTGGTATTT
TATTAAAAAAAGAGCCAATCTCGCCCCTCTTGATAAAAAAGACCCTATGT
ATAATTCAAATTTTTATTTCTCCCACTTCGGTATAACCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_c14.b1 MSMg01no134_c14.b1 CHROMAT_FILE:
MSMg01no134_c14.b1 PHD_FILE: MSMg01no134_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:18 2005
         (772 letters)



>mm_chr8_45019300_45020471
          Length = 1172

 Score = 1089 bits (563), Expect = 0.0
 Identities = 581/587 (98%)
 Strand = Plus / Minus

                                                                        
Query: 186  acagcgcattaaataagtagatttgtgttgcttaggaataatagaaacagtacattcatt 245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1172 acagcgcattaaataagtagatttgtgttgcttaggaataatagaaacagtacattcatt 1113

                                                                        
Query: 246  tcagtttagataaaatttcctttttgaatatttcaacttttgtttggcatgtactaatga 305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1112 tcagtttagataaaatttcctttttgaatatttcaacttttgtttggcatgtactaatga 1053

                                                                        
Query: 306  agaatatacacatattcaaggccagcaacacagagagaaagacacagacacagacacaca 365
            |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 1052 agaatatacacatattcaaggccagcaacacagaaagaaagacacagacacaggcacaca 993

                                                                        
Query: 366  tgcacacacacaaacacacatgcagatatgcagctattgcaaagtacataaatacttaaa 425
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 992  tgcacacacacaaacacacatgcagatatgcagctatcgcaaagtacataaatacttaaa 933

                                                                        
Query: 426  tcagacattgcatattttcattcatatgtggatgctctctttgaatattcatgtatgagt 485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932  tcagacattgcatattttcattcatatgtggatgctctctttgaatattcatgtatgagt 873

                                                                        
Query: 486  gtttaattaaattggtatagtcaaaaaaggcatgacactaataaggagccatcatggagg 545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872  gtttaattaaattggtatagtcaaaaaaggcatgacactaataaggagccatcatggagg 813

                                                                        
Query: 546  tcttttaagaaaggaaaaatatgtcacagatggtatgaaaagaggaagacttcctgtagg 605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812  tcttttaagaaaggaaaaatatgtcacagatggtatgaaaagaggaagacttcctgtagg 753

                                                                        
Query: 606  ggcagtaatgccttcaggctgctggaggggtgtttagttctcttaaggcagagctagcta 665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752  ggcagtaatgccttcaggctgctggaggggtgtttagttctcttaaggcagagctagcta 693

                                                                        
Query: 666  atggcaactcaggaggctgagacatgtcataaatctataggaattcacagtgccaatata 725
            ||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct: 692  atggcaactcaggaggctgagacatgtcataaatctataggaagtcactgtaccaatata 633

                                                           
Query: 726  gcagagaatgtaatataatgcttagagactgtatcttcattctccta 772
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632  gcagagaatgtaatataatgcttagagactgtatcttcattctccta 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 772
Length of database: 1172
Length adjustment: 10
Effective length of query: 762
Effective length of database: 1162
Effective search space:   885444
Effective search space used:   885444
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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