BAC Information

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BAC

Clone NameMSMg01-134H02
Chromosome8 (Build37)
Map Location 55,927,158 - 56,104,264
singlet/doubletdoublet
Overlap geneGpm6a
Upstream geneVegfc, Spcs3, Asb5, Spata4, Wdr17
Downstream geneLOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134H02.T7 (MSMg01no134_h02.b1)MSMg01-134H02.TJ (MSMg01no134_h02.g1)
ACCAG341156AG341157
length1,1781,133
length of high quality
(start - end)		400 (472 - 871)634 (121 - 754)
definitionCHROMAT_FILE: MSMg01no134_h02.b1 PHD_FILE: MSMg01no134_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:51 2005CHROMAT_FILE: MSMg01no134_h02.g1 PHD_FILE: MSMg01no134_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,103,865 - 56,104,264)(55,927,158 - 55,927,791)
sequence
NAAATTTTNNNNNGAAACAGTGGGCGCTATAGACTACTATAGGGAGAGGA
TCCGCGGAATTCTTTTCTGCTCTCCTGCCTATTATTGTAAGGAATCTTAA
TTAAGTAAGTAGTATACGCATGAGACATATATTACTACCCAATAACATGG
TTTCATTTACTTGCTATAATTATAAAGTTGTTATATTTTTTTTAAAAGGA
TCAAATGTTTGTATCCTCTATACCACTAAGAAAAATATAAAAACCCAAAA
GGAGGCACATAAAGCCTTATAAAAAATGAGACATGAAAAAAAAATCTCAC
AGGTATTTGTATATGAAAATTAAATGTGAAAGAAGTCTAGGTTATATGAA
TTTTAGGACATATTAGAATAAATTTAGGACATAGGGTTTGATAATTAATA
ACTAATATTAATAAACTTTAAAAATTAATTGTTAGATTTGGAGACTTGTC
AGCTCTGATTATATAACTACGTTATCTTAGCTTTCCTTCATGTGAATAAT
GAATCTTGCTGCAGTTTGGATAGTACAGGACTAGGCATGAACAGGGTGAG
ATCAGACTGAAGGTACAAATTCAAAGAGGAGAGCCAGAATCCTAGATTAG
CCATTCATTCACACATCTAAAACTCTTTTTCTGGCACATATTTACCTTCA
TATTATTATAAGTACGATACCTACCATATTATATCTTCAAATTTCATAAC
AGCTTTAAGAATATTAAGTTTTTCATTAATAATTAGGCCAGGGCTTTAAG
CAATTATTATTATTACTTTGGATGAGTTTATATTTTGTCCAGAATTAGGA
TATATATTCATTTCAACTAAATGAAACATTTTGTAAAATCTTGCTTGTGT
CATGTATTATTCAACACATTGTTTTAAATGTGGTTTATATTTAATGACTA
ACAAAGTATCTGCATGATTTCAAGTTTCTTTATGTAATTTTTCAGGGCTA
CAATCCCCAATGCCTTTTTAAAAGGGCGAAAAAAAACATATTTGTGGTAA
AGGTATTTATCAAATTTGTTTTTTTTGCGGTCCAAAATCTTTGAACCAAC
GCAATTCCTTCTTTAATAAAAAGAATTTTTTTTGTCTTTTTGTAGAAAAA
AAAAATTTATATCTTTCTCCTCTTCTTTCCTAAATATCTGTAAAAAATCT
TTTCTTATTTTTTGTTTCTAAACGGTGT

CTCTTTNNTAATCACGGNAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTTTACTTGTGATTTTTTAAAAAATATT
ATTTTTGTAAGTCCTTCATACTTCTTATTGACCCTGTTGACTTTCTTTTA
ATTTCATGGCACATCTTTTCTAGTCTTTTATTCTCTGCTTCTGTATTAAT
AATTAAAGGACATAATTTATGAAGAATATATATGTGGGTGCTGTTTTCCC
ACATAGCTGATAATCTGCATTTTATTTGTTCAATAGATAGCATTAAAATT
GACAGTTGAAGTGAACTCAATCTTCCATATTATTAATTTTCTGTATGTAA
TATCTGTTATTTGTTCACTACCTACTTTCTCCATAGACTCTTTTGAATCA
CTTGGTTTTATTTTCTTATCAATTAAATTTCATGGTAGTTGTTATCATAT
TTTTCTATAGTATCCAATGTATGCTTTAACTTGTTTGAGTCTCCCTTTTA
GTATTATTGTCGTGTATACATAGCACAAGAAACATTTAGCTTTACCTTCC
TGTGCCATTGCCACAGTTTATTCTACATGGTTTAAAGTTCATAATACTAT
TTTATTATGTATATTTTAAAAAATCATTTATCAACAACAGTTTTAAATGA
GAAAATACGTTGAAATACTTTTATTGTTTTATGCTGCTTTAACCTATCAG
ACGCAACCATTTATTAACAAGATATTTTCATTTTCTCAGTTTTAGTGGAC
AGGGACCCCAAAATTATTGCTATGATAATCCCAGGGTCTGGTTAAGGATG
CTCTAAACTGGATAGCAAGAAGATGTATTGATATTTGTCCCTTGNACCAA
AGAAGCAATGTGACTTTACATGGTTGAAATCTGAAGAGCAAGAAAGAGGA
ATCTTTTATAAACCTCTACCCCTAATTAAGCCAGTATAGCCCGATCTTTT
TTTAGGCCTGACATTTCTATTATCTCACGGGATAACCCTACTTTTTTGTT
AAAACCCTTCTTCTCCCCAAATACCTCGCAAAATTGTTTTACCAAAAGCC
CCTTTTGAGTCCCCCTCACTATTTTTATTTCCTTTTCCCTCCGAAAAATC
CCCTCAAATTTTTCTCTCTCCTCAAATTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_h02.b1 MSMg01no134_h02.b1 CHROMAT_FILE:
MSMg01no134_h02.b1 PHD_FILE: MSMg01no134_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:51 2005
         (400 letters)



>mm_chr8_56103665_56104464
          Length = 800

 Score =  735 bits (380), Expect = 0.0
 Identities = 395/400 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatcttagctttccttcatgtgaataatgaatcttgctgcagtttggatagtacaggac 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttatcttagctttccttcatgtgtataatgaatcttgctgcagtttggatagtacaggac 541

                                                                       
Query: 61  taggcatgaacagggtgagatcagactgaaggtacaaattcaaagaggagagccagaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 taggcatgaacagggtgagatcagactgaaggtacaaattcaaagaggagagccagaatc 481

                                                                       
Query: 121 ctagattagccattcattcacacatctaaaactctttttctggcacatatttaccttcat 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctagattagccattcattaacacatctaaaactctttttctggcacatatttaccttcat 421

                                                                       
Query: 181 attattataagtacgatacctaccatattatatcttcaaatttcataacagctttaagaa 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 attattataagtacaatacctaccatattatatcttcaaatttcataacagctttaagaa 361

                                                                       
Query: 241 tattaagtttttcattaataattaggccagggctttaagcaattattattattactttgg 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 360 tattaagtttttcattaataattaggccagggcttcaagcaattattattattactttgg 301

                                                                       
Query: 301 atgagtttatattttgtccagaattaggatatatattcatttcaactaaatgaaacattt 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 300 atgagtttatattttgtccagaattaggatatatgttcatttcaactaaatgaaacattt 241

                                                   
Query: 361 tgtaaaatcttgcttgtgtcatgtattattcaacacattg 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgtaaaatcttgcttgtgtcatgtattattcaacacattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no134_h02.g1 MSMg01no134_h02.g1 CHROMAT_FILE:
MSMg01no134_h02.g1 PHD_FILE: MSMg01no134_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:51 2005
         (634 letters)



>mm_chr8_55926958_55927991
          Length = 1034

 Score = 1172 bits (606), Expect = 0.0
 Identities = 627/634 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcttattgaccctgttgactttcttttaatttcatggcacatcttttctagtctttta 60
           |||||||||||   |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 cttcttattgaaattgttgactttcttttaatttcatggcacatcttttctactctttta 260

                                                                       
Query: 61  ttctctgcttctgtattaataattaaaggacataatttatgaagaatatatatgtgggtg 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctttgcttctgtattaataattaaaggacataatttatgaagaatatatatgtgggtg 320

                                                                       
Query: 121 ctgttttcccacatagctgataatctgcattttatttgttcaatagatagcattaaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgttttcccacatagctgataatctgcattttatttgttcaatagatagcattaaaatt 380

                                                                       
Query: 181 gacagttgaagtgaactcaatcttccatattattaattttctgtatgtaatatctgttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacagttgaagtgaactcaatcttccatattattaattttctgtatgtaatatctgttat 440

                                                                       
Query: 241 ttgttcactacctactttctccatagactcttttgaatcacttggttttattttcttatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgttcactacctactttctccatagactcttttgaatcacttggttttattttcttatc 500

                                                                       
Query: 301 aattaaatttcatggtagttgttatcatatttttctatagtatccaatgtatgctttaac 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 aattaaatttcatggtagttgttatcatatttttctacagtatccaatgtatgctttaac 560

                                                                       
Query: 361 ttgtttgagtctcccttttagtattattgtcgtgtatacatagcacaagaaacatttagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtttgagtctcccttttagtattattgtcgtgtatacatagcacaagaaacatttagc 620

                                                                       
Query: 421 tttaccttcctgtgccattgccacagtttattctacatggtttaaagttcataatactat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttaccttcctgtgccattgccacagtttattctacatggtttaaagttcataatactat 680

                                                                       
Query: 481 tttattatgtatattttaaaaaatcatttatcaacaacagttttaaatgagaaaatacgt 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 tttattatgtatattttaaaaaatcatttatcaacaacagttttaaatgagaaaatacat 740

                                                                       
Query: 541 tgaaatacttttattgttttatgctgctttaacctatcagacgcaaccatttattaacaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgaaatacttttattgttttatgctgctttaacctatcagacgcaaccatttattaacaa 800

                                             
Query: 601 gatattttcattttctcagttttagtggacaggg 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 801 gatattttcattttctcagttttagtggacaggg 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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