BAC Information

Click to search

BAC

Clone NameMSMg01-134K17
Chromosome8 (Build37)
Map Location 82,828,522 - 82,829,207
singlet/doubletsinglet
Overlap genenone
Upstream geneA630049P17, Smad1, LOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10, LOC100039439, Hhip, LOC546075
Downstream geneGypa, Frem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134K17.T7 (MSMg01no134_k17.b1)MSMg01-134K17.TJ (MSMg01no134_k17.g1)
ACCAG341328AG341329
length1,1931,216
length of high quality
(start - end)		734 (89 - 822)685 (131 - 815)
definitionCHROMAT_FILE: MSMg01no134_k17.b1 PHD_FILE: MSMg01no134_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:18 2005CHROMAT_FILE: MSMg01no134_k17.g1 PHD_FILE: MSMg01no134_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCCCCTTNNNNAAACATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGGCCCATAGCTAAACCCTTTAAAAGGTATATACAGCA
AACCAGTAGCCAACATCCCCCTAAATGGAGAGAAATTTGAAGTAATCCCA
CTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTATCCAA
TATAGTACTTGAAATACTAGCCAGAGCAATTAGAAAACAAAAGGAGATCA
AGGGGATACAAATTGGAAAGGAAGAAGTCAAAATATCACTATTTGCAGAT
GATATGATAGTATATATAAGTGACCCTGAAAATTCCACCAGAGACCTCCT
AAACCTGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAA
ACAAATCAGTGTTCTTTCTCTGCACAAAGGATAAACAGGCTGAGAAAGAA
ATTAGGGAAACAACACCCTTTACAATAGTCAAAAATAATATAAAATATCT
TGGTGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATATCAACTTCA
AGTCTCTGAAGAAAGAAATTGAAGATCTCAGAAGATTCAAAGATGTCCCA
TGCTCATGGATTGGCAGGATTAATATAGTTGAAATTGCTATCTTGCTGAA
AGCAATTTACAGATTCAAAGCAATCTCCATCAAATCAATTCTTCACTGAG
TTAGAAAGGGCAATTTGAAAATTCATCTGGAATAACAAAAAACCTAGGAT
AGCANAAACTATTCTCAACAATACAAGAACCTCTGGTAGAATCACCATGC
CTGGCCTCAAGCTGTAATACAGAGTAAGTGTGATAAAAACTGCATGGTAC
TGGTACAGTGACAGACAGGTAGATCAATGGAATATAATTGAAAACACCAA
AAGAATTTGAGAGGCCCCCCACCCTATGTCCCCTTGATCTTTTACAAGGG
AGTTTAAAACCCTCCACGGGGAAAAAAAAAAAGCATTTTTCTACAAAAGG
GGGGTGGGGCCAACAAATGGGTTTTCCTGGTACAAAAAAGGGGAATTGAA
TTCTTTCCTATTTCCCTTGTCCCAAAGGTTCAAGTCTTAAGGGGTTTCTG
GGGACTTCCCCCTTAAACCCCGAAAAACCTTGGAAATTTTCTTAAGGAAA
TAAGGGTGGGAAAAAGCCCTGTTAAAATATGGGCTCCAGGGGG

NCGTTTCTCTTTTTAATCATTGGAGGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTAAGGATGTATCAGGTC
TTGGGTTAAGGAACATTTTCCCTTTTTTTGTAGATCTGGCCTAGGAGACA
AATTTTTGTTAAGTTATTTTTAAGATGGGTACGTGTTAATTTCTTTAAGT
CCTGACATATTTATCTTCAAATTTATTATATATTTAAGAGATTTCTTAAA
TGTTGATTGAATGGACACAACTTTGTCTCCCTTCATAACTTGGTATTACT
ACACCTAATCTCAGATACTAAACACAGATGGGAATCTTGGATAGTCTTAA
CCTTTATATTCTCTGTGTTCTACCGTATTTTCATCTTAATTTCATGTGGT
ACTGTATGTCTTTGGAGCATTTATTTTTGTCTTGTTGATAACCTAAAGTC
TCTGATTTTGTTAACCTCTTATTCTGTTACTTGCTAGAATCCCATCAATT
CCTAAAGCAGCAGTAGATACTCTAGTAGATGTTTAGTATATAATATCTAT
ACTATCTCTACTAAAGTCATATAGATAGATGCATATTTTCATTTTTTTTC
TGCTTTCTTCACAGACAGGAAAGAACAAGGATTGATATAAGGAAGCTGAA
AAGTAGACTTCTAAAAACTCTCCAATAGTTGAAACATCTTTTCTTCTTCT
CTCTCTATTTTGTAGACCATGGCTAGAGCTATGGTCATCATACAAACAGA
GGGTGCTCTTGTGGTTGGTGACTGACAAAGACACAAACTGAAGATGAATC
AGGCACACTGTAGGCACCTGGAACCCATGTGATGCTGTAGAGCAGCTGAG
ACATGCCTGAGCTCTTGCNGAAAAGGAATAGGAAAATGACCCTTCGTTGT
ATGTTAAAAGCCCTTGTTTTTCCAGACAGTTATTAAGGGGTCTATGAGTT
TCTCTGAAGGATTCCTAAGGGACCTCTGCCCCTTTTTCAAAGCATTCCTT
TCTTTTTAAAGGGTTCTGAACCTTCCTTAAAAAAAGGAACTCCTTTAAAT
GAGAGAATTTGCCCTTTATAAATTGAATTTTTGCCCCGGGTGGGTTTCCT
TTCTATTTTGTAAAACATGTGACTAAAAAGGTCTTTATCTCTTTAACATT
TGTCAAAACCCTTGTTGGAGGTATTGTCTATGTTCAAAACATTTTTACCC
TCTTAATATTATATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_k17.g1 MSMg01no134_k17.g1 CHROMAT_FILE:
MSMg01no134_k17.g1 PHD_FILE: MSMg01no134_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:18 2005
         (685 letters)



>mm_chr8_82828322_82829407
          Length = 1086

 Score = 1265 bits (654), Expect = 0.0
 Identities = 679/688 (98%), Gaps = 5/688 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagatctggcctaggagacaaatttttgttaagttatttttaagatgggtacgtgttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 886 tagatctggcctaggagacaaatttttgttaagttatttttaagatgggtatgtgttaat 827

                                                                       
Query: 61  ttctttaagtcctgacatatttatcttcaaatttattatatatttaagagatttcttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ttctttaagtcctgacatatttatcttcaaatttattatatatttaagagatttcttaaa 767

                                                                       
Query: 121 tgttgattgaatggacacaactttgtctcccttcataacttggtattactacacctaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tgttgattgaatggacacaactttgtctcccttcataacttggtattactacacctaatc 707

                                                                       
Query: 181 tcagatactaaacacagatgggaatcttggatagtcttaacctttatattctctgtgttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 706 tcagatactaaacacagatgggaatcttggatagtcttaacctttatattctctgtgttt 647

                                                                       
Query: 241 taccgtattttcatcttaatttcatgtggtactgtatgtctttggagcatttatttttgt 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 646 taccgtattttcatcttaatttcatgtggtactgtaggtctttggagcatttatttttgt 587

                                                                       
Query: 301 cttgttgataacctaaagtctctgattttgttaacctcttattc--tgttacttgctaga 358
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 586 cttgttgataacctaaagtctctgattttgttaacctcttattctgtgttacttgctaga 527

                                                                       
Query: 359 atcccatcaattcctaaagcagcagtagatactctagtagatgtttagtatataatatct 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 atcccatcaattcctaaagcagcagtagatactctagtagatgtttagtatataatatct 467

                                                                       
Query: 419 atactatctctactaaagtcatatagatagatgcatattttcattttttttctgctttct 478
           ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 466 atactatctctactaaagtcaaatagatagatgcatattttca-tttttttctgctttct 408

                                                                       
Query: 479 tcacagacaggaaagaacaaggattgatataaggaagctgaaaagtagacttctaaaaac 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tcacagacaggaaagaacaaggattgatataaggaagctgaaaagtagacttctaaaaac 348

                                                                       
Query: 539 tctccaatagttgaaacatcttttc-ttcttctctctctattttgtagaccatggctaga 597
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 347 tctccaatagttgaaacatcttttctttc-tctctctctattttgtagaccatggctaga 289

                                                                       
Query: 598 gctatggtcatcatacaaacagagggtgctcttgtggttggtgactgacaaagacacaaa 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gctatggtcatcatacaaacagagggtgctcttgtggttggtgactgacaaagacacaaa 229

                                       
Query: 658 ctgaagatgaatcaggcacactgtaggc 685
           ||||||||||||||||||||||||||||
Sbjct: 228 ctgaagatgaatcaggcacactgtaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1086
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1076
Effective search space:   726300
Effective search space used:   726300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |