BAC Information

Click to search

BAC

Clone NameMSMg01-135G08
Chromosome8 (Build37)
Map Location 12,901,768 - 12,901,950
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040155, LOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229
Downstream geneMcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135G08.T7 (MSMg01no135_g08.b1)MSMg01-135G08.TJ (MSMg01no135_g08.g1)
ACCAG341865AG341866
length802718
length of high quality
(start - end)
190 (82 - 271)244 (71 - 314)
definitionCHROMAT_FILE: MSMg01no135_g08.b1 PHD_FILE: MSMg01no135_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:31 2005CHROMAT_FILE: MSMg01no135_g08.g1 PHD_FILE: MSMg01no135_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAAGAGCCGC
GGAATTCTGGTATATCTCACCCAACACCAGGGAAACTGGACCAGCAGTAG
TGGGCTCCTGTCTACCTCTTGGTGCCGACAGCAGCAGGTCCTGCTCCTGC
TCCTGCTCTGCCCACTGCAGGGAGCCTCCCTTCTCTGGGAGTGAAAATCC
TGCAAAGCTGGCATTCTCCTCAGGCCCCTTGTCCCCTCTGGATCCTGCAT
TTCATCACTCATTGCTACAATCTACAGGATTTTCTGCTTGCTGTTTTGCA
CATTTATATTATCTATCCTGACTGTTCATAGCTGGCTTACTATGCCCGCC
ATAGGAACCCGTCTAGGGAGACCGCCCTCTATTCACTGTGTAAAACTGCC
ATCCTTAAGTAGTTTTTAGATTCATGGAATAGCCAGTTCTCTTCATCGGT
AAACTCTGCTTGAGGCTGCCATTTAGTGATCATTATGAATGCAGCTTAAC
CCAAAATCTCACCTTTAGAACCGCCATTGTTATATAACAAAGCTCACTCG
TCCTATATACGAATCCCAACCTCACTATCCACCAATATTACACATCCATT
ATGAAATAATTCCTACTAGTGACGTAAATTTGACAAGCCTGCCTGACGAG
TCTACAAAATCTTTTCTCTCCAACAACATCTAACTTCCCCCCCCAAATCA
TCAATATACCACCTACTCTTATCCTCACCTTCCACATATAACCCCCCTCC
CCATTTTCACCTTAACCACCCACTCCCCATTTGCATTTTAACTCCCCCCC
CC
CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCCTAAAGAAATCCTGCCTCTGGTCAACAACACCTGCCCT
GCACCCTGCAAGTGGAGGGTGTTGACATGATGTCTGGGCATTGCTGGTGG
CTCTAGACCAGTAGTTCTCAACCTTTCCTTTAACAAAGTTCCTCATGTTA
CAGTGATCCCCAACCATAAGGTTATTTTGTTATGACTCCACAACTGTGAC
TTTGCTACTGTTATGAATTTTGAGGTAAATATCTGACATGCGACTCCCAA
AGGGCTTGTGAGCTATATTTTGAGAACCAGCTGTTCTAGGTTTTTTGCTT
CTAGGAGAGGCATTTAGGTTTTGGACATTGCAAATCTCAAGGGCTAGCTG
AGATGACAGAAGAGATTCAGAGCACTGGACCAGAAACCAAGCTGGGATCA
GAAATAGCAGTTGAACACTCTCCTACAGCGGGACTCCAGTCTCACCAAGG
GGGCTTTTTTGCCCCCCTAAGTCTGGCAACCCTAGATCACATCAATAACC
CAAGTAGTTAAAAAAAAACAACAACCATTTTGAAAGTAAATAGAATGTAT
CTTTTCTTTTAAAATATTTTACCCCTGTTAGCATTTAAAAAGGTTTTTGG
TTAAAATTTTTTTTTTTCCAAACTTACAAAGGGAATGGAGGCCCCCCTGA
AAAAGGAACCCTTGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_g08.b1 MSMg01no135_g08.b1 CHROMAT_FILE:
MSMg01no135_g08.b1 PHD_FILE: MSMg01no135_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:31 2005
         (190 letters)



>mm_chr8_12901568_12902151
          Length = 584

 Score =  308 bits (159), Expect = 2e-88
 Identities = 179/189 (94%), Gaps = 6/189 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaactggaccagcagtagtgggctcctgtctacctcttggtgccgacagcagcaggtcc 60
           ||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||
Sbjct: 201 gaaactggaccagcagtagtgggctcctgtccacctcttggtggtgacagcagcaggtcc 260

                                                                       
Query: 61  tgctcctgctcctgctctgcccactgcagggagcctcccttctctgggagtgaaaatcct 120
           |||||||||||      |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctcctgctc------tgcccactgcagggagcctcccttctctgggagtgaaaatcct 314

                                                                       
Query: 121 gcaaagctggcattctcctcaggccccttgtcccctctggatcctgcatttcatcactca 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gcaaagctgccattctcctcaggccccttgtcccctctggatcctgcatttcatcactca 374

                    
Query: 181 ttgctacaa 189
           |||||||||
Sbjct: 375 ttgctacaa 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 584
Length adjustment: 8
Effective length of query: 182
Effective length of database: 576
Effective search space:   104832
Effective search space used:   104832
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)