BAC Information

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BAC

Clone NameMSMg01-135I01
Chromosome8 (Build37)
Map Location 68,250,828 - 68,251,085
singlet/doubletsinglet
Overlap geneMarch1
Upstream geneKlhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967
Downstream geneLOC100040986, 1810029B16Rik, Tktl2, Npy5r, Npy1r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135I01.T7 (MSMg01no135_i01.b1)MSMg01-135I01.TJ (MSMg01no135_i01.g1)
ACCAG341944AG341945
length721724
length of high quality
(start - end)
267 (47 - 313)646 (75 - 720)
definitionCHROMAT_FILE: MSMg01no135_i01.b1 PHD_FILE: MSMg01no135_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:39 2005CHROMAT_FILE: MSMg01no135_i01.g1 PHD_FILE: MSMg01no135_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTAGTCCTCCACTTCCCCCAAAAGCCAGATATGCCCATCATAC
CTGTAAACTCAGTATTGTAATGGAGGAATCAGACAGCCAGCTCGGCCAGA
ACAAGGATCTTATTCAGTGAGAGACAACCCCCTCCACACACACAAATGAA
AAACAACCAACACAAACACAAAAGACATTAAAATGAAATATACATAGCAG
GGTCTCTCCTATTACAACAAGATTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTNAANNANANAAATTTTTTTTTATAAAAATTTNAATATA
AAAAAAAATTTTTATAATATATAATTATATTTTAATATTATAATAATATT
TTNAANNNTTATTTTTTATTTTCCCCCTTTTTTATTTTATCTATTTAACT
ATTTTTCTCCTTCCCCTTTTTTTCTCTCTTTCCCTCATTATATTACCTAC
ACCCCCAATTTTTTCCTTTTTATTTATAACCCTCTTCCTTTTTTTATATT
TTCCCCAATACCCCCACCAATTTTTTCCCCCCTCCTTTTATTCCTCTTCT
ACTCCCCTCTTCTATACACCTTTATCACTTTCATTCCTATTCCTCCCTCT
CCTCCCCACTCATCCCATATATCTTTTTTATACTATTTACCCATTTTTTT
ATTCTCCTTCTATTATTTCTN
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATAAAA
GCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCT
GGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTC
CCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAA
CAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATC
ACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTA
CCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATAT
AAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACA
GGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATA
ATATAAAATATCTTGGCGTGACTCTAACTAAGGAAGTTAAAGATCTGTAT
GATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAG
ATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAA
TGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAA
ATTCCAACTCAATTCTTCAACGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_i01.b1 MSMg01no135_i01.b1 CHROMAT_FILE:
MSMg01no135_i01.b1 PHD_FILE: MSMg01no135_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:39 2005
         (267 letters)



>mm_chr8_68250660_68251325
          Length = 666

 Score =  433 bits (224), Expect = e-126
 Identities = 251/260 (96%), Gaps = 2/260 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttagtcctccacttcccccaaaagccagatatgcccatcatacctgtaaactc 64
           |||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 426 gaattccttagttctcca-ttcccccaaaagccagatatgcccatcatacctctaaactc 368

                                                                       
Query: 65  agtattgtaatggaggaatcagacagccagctcggccagaacaaggatcttattcagtga 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 367 agtattgtaatggaggaatcagacagccagctcggccagaacaaggatcttatttagtga 308

                                                                       
Query: 125 gagacaaccccctccacacacacaaatgaaaaacaaccaacacaaacacaaaagacatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 307 gagacaaccccctccacacacacaaatgaaaaacaaccaacacaaacacaaaacacatta 248

                                                                       
Query: 185 aaatgaaatatacatagcagggtctctcctattacaacaagattgtgtgtgtgtgtgtgt 244
           ||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 247 aaatgaaatatacatagcagggtttctcctattaaaacaagattttgtgtgtgtgtgtgt 188

                               
Query: 245 gtgtgtgtgtgtgtgtgtgt 264
           ||||||||||||| ||||||
Sbjct: 187 gtgtgtgtgtgtg-gtgtgt 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 666
Length adjustment: 9
Effective length of query: 258
Effective length of database: 657
Effective search space:   169506
Effective search space used:   169506
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)