Query= MSMg01no135_i21.b1 MSMg01no135_i21.b1 CHROMAT_FILE:
MSMg01no135_i21.b1 PHD_FILE: MSMg01no135_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:42 2005
(654 letters)
>mm_chr8_80222357_80223411
Length = 1055
Score = 880 bits (455), Expect = 0.0
Identities = 492/505 (97%), Gaps = 3/505 (0%)
Strand = Plus / Minus
Query: 151 tgtgactgtcattggcgatttttaaagattggctctgacattacggcctgagaaactgct 210
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 tgtgactgtcattggcgatgtttaaagattggctctgacattacggcctgagaaactgct 996
Query: 211 aattagctttccagacatgatgcactaaagatggatctgtagaagcacatggctttgtat 270
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 aattagctttccagatatgatgcactaaagatggatctgtagaagcacatggctttgtat 936
Query: 271 cacctgccagtcggaaataaaaaaaaatgattcatatagatcttctaaatgttggcctat 330
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 cacctgccagtcggaa--agaaaaaaatgattcatatagatcttctaaatgttggcctat 878
Query: 331 ttgagatgtaatatcaaaaaatgcatccagcactaccatccccagccttggccagccaga 390
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 877 ttgagatgtaatatcaaaaaatgcatccagcactaccatccccagtcttggccagccgga 818
Query: 391 agagtggaagattcagactcagagcttgaaggctgcagtcaggttgcactggccctgacc 450
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 agattagaagattcagactcagagcttgaaggctgcagtcaggttgcactggccctgacc 758
Query: 451 agtataaccttgttatttcccaaggatacaaataaaacatagaactcatttttaaaactt 510
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 757 agtataaccttgttatttcccaaggatacaaataaaacatagaactcattttcaaaactt 698
Query: 511 taaaaaggtgtaatggtatataacagatccttgactaggagcctaaaattaataattgag 570
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 taaaaaggtgtaatggtatataacagatccttgactaggagcctaaaattaataattgaa 638
Query: 571 -ttttctttcaagtcactataatatttacattgtgatgtgtatagcctactgagttaatt 629
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 637 attttctttcaagtcactataatatttacattttgatgtgtatagcctactgagttaatt 578
Query: 630 tacagtatggtttagctttcccttt 654
|||||||||||||||||||||||||
Sbjct: 577 tacagtatggtttagctttcccttt 553
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1055
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1045
Effective search space: 672980
Effective search space used: 672980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_i21.g1 MSMg01no135_i21.g1 CHROMAT_FILE:
MSMg01no135_i21.g1 PHD_FILE: MSMg01no135_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:43 2005
(249 letters)
>mm_chr8_80159936_80160586
Length = 651
Score = 422 bits (218), Expect = e-122
Identities = 240/248 (96%), Gaps = 2/248 (0%)
Strand = Plus / Plus
Query: 1 attctttttctctgcctgtccataaactagaactttttttttttt--aaaaacaggtaag 58
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 attctttttctctgcctgtccataaactagaacttttttttttttttaaaaacaggtaag 260
Query: 59 gccaaacaaaaaccccttcccttagtgcatattaaatgtacaaattgatggatcttatca 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccaaacaaaaaccccttcccttagtgcatattaaatgtacaaattgatggatcttatca 320
Query: 119 tgccattgctgcgtagccatgagtacctcttcattactttttctggggactcccatacct 178
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 tgccattgccgcgtagccatgagtacctctttattactttttctggggactcccatacct 380
Query: 179 ttcctcttctgtattcccaacaatccctcctttactttcatatccccacttttcatttga 238
||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 381 ttccttttctgtatccccaacaatccttcctttactttcatatccccacttttcatttta 440
Query: 239 tatctgag 246
||||||||
Sbjct: 441 tatctgag 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 651
Length adjustment: 9
Effective length of query: 240
Effective length of database: 642
Effective search space: 154080
Effective search space used: 154080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
