Query= MSMg01no135_n15.b1 MSMg01no135_n15.b1 CHROMAT_FILE:
MSMg01no135_n15.b1 PHD_FILE: MSMg01no135_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:04 2005
(440 letters)
>mm_chr8_101258375_101259214
Length = 840
Score = 828 bits (428), Expect = 0.0
Identities = 434/436 (99%)
Strand = Plus / Plus
Query: 5 gaattccaagcaatttacattatacctttcctttaccctctccctttccttctctatttc 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagcaatttagattatacctttcctttaccctctccctttccttctctatttc 264
Query: 65 tccctctcccactttttctccatccaacacctctcctttgcatgtttgtgtatttgagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccctctcccactttttctccatccaacacctctcctttgcatgtttgtgtatttgagga 324
Query: 125 taaaatattcagctacagaaatgacagtctcatgattttgatgtgagtgatccttctagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaaatattcagctacagaaatgacagtctcatgattttgatgtgagtgatccttctagt 384
Query: 185 gacatatggagtggatacaccatgataagaaagaaatatggaaagtctttataaaggatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gacatatggagtggatacaccatgataagaaagaaatatggaaagtctttataaaggatg 444
Query: 245 aaaaggcgaagcgtcgcgattcagtcaggagcctcagtaaggagggagagaaacagtgaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaaggcgaagcgtcgcgattcagtcaggagcctcagtaaggagggagagaaacagtgaa 504
Query: 305 actagatgagaacacaatcttttctaaaggacatggttggccaaatatcaagctctaacc 364
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 actagatgagaacacaatcttttctaaaggacatggttggccaaatgtcaagctctaacc 564
Query: 365 ctcaatatattgatcaacaccattcagcacactcctaagactacttctaaggtaatatct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcaatatattgatcaacaccattcagcacactcctaagactacttctaaggtaatatct 624
Query: 425 ggggggagggtgttgt 440
||||||||||||||||
Sbjct: 625 ggggggagggtgttgt 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_n15.g1 MSMg01no135_n15.g1 CHROMAT_FILE:
MSMg01no135_n15.g1 PHD_FILE: MSMg01no135_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:04 2005
(572 letters)
>mm_chr8_101353349_101354319
Length = 971
Score = 1058 bits (547), Expect = 0.0
Identities = 566/573 (98%), Gaps = 3/573 (0%)
Strand = Plus / Minus
Query: 1 ctgatttgaaatggttatcaatgaataattctttaaaatgttgatggggcgggggcgggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ctgatttgaaatggttatcaatgaataattctttaaaatgttgatggggcgggggcgggg 712
Query: 61 gg-gacacaggaaatatatatatatttttttgtggttttcccctatcagattttgaagtt 119
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ggagacacaggaa--atatatatatttttttgtggttttcccctatcagattttgaagtt 654
Query: 120 atttcttaggaaaattctgggatacttccactaatttgctgtctatagtccatttttttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 atttcttaggaaaattctgggatacttccactaatttgctgtctatagtccatttttttt 594
Query: 180 tctgttttgattttttttcttttttctctcacaagtagagcagcaagccagaagatacaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tctgttttgattttttttcttttttctctcacaagtagagcagcaagccagaagatacaa 534
Query: 240 ctaaaagacccttctcaaatcaaataggatatagtagaaataaatgaccttttctttcag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ctaaaagacccttctcaaatcaaataggatatagtagaaataaatgaccttttctttcag 474
Query: 300 acagatacaagctgtcagccccaaatgttacattttctgtgaacttgcttctgaagctac 359
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 473 acagatacaagctgtcagccccaaatgttacattttctgtgaacttgtttctgaagctac 414
Query: 360 actcaagagtgtgacttttgagagaggcaggattctagcaggagtgggaggtgctgaggg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 actcaagagtgtgacttttgagagaggcaggattctagcaggagtgggaggtgctgaggg 354
Query: 420 ttaaatttaccgtaggacatgaaagatgctaaccagcttctcaacagctgagacatagca 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 353 ttaaatttaccgtaggacatgaaagatgctaaccagcttctcaacagccgagacatagca 294
Query: 480 gcttcttttatgcacttaaattacaagcatagaatagcaatgcccggcgggatatatcaa 539
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 293 gcttcttttatgcacttaaattacaagcatagaaaagcaatgcccggcgggatatatcaa 234
Query: 540 taccaaaccagacttatagcttgtgattcagcc 572
|||||||||||||||| ||||||||||||||||
Sbjct: 233 taccaaaccagacttagagcttgtgattcagcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 971
Length adjustment: 10
Effective length of query: 562
Effective length of database: 961
Effective search space: 540082
Effective search space used: 540082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
