BAC Information

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BAC

Clone NameMSMg01-135O22
Chromosome8 (Build37)
Map Location 101,827,048 - 101,939,886
singlet/doubletdoublet
Overlap geneCdh8, A330008L17Rik
Upstream genenone
Downstream geneLOC667531, LOC100042069, LOC436054, LOC100042078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135O22.T7 (MSMg01no135_o22.b1)MSMg01-135O22.TJ (MSMg01no135_o22.g1)
ACCAG342266AG342267
length699715
length of high quality
(start - end)
239 (82 - 320)411 (68 - 478)
definitionCHROMAT_FILE: MSMg01no135_o22.b1 PHD_FILE: MSMg01no135_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:10 2005CHROMAT_FILE: MSMg01no135_o22.g1 PHD_FILE: MSMg01no135_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,939,648 - 101,939,886)(101,827,048 - 101,827,458)
sequence
CAACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACGAAGCCAG
GNGGNATTCCCACGCGCTTTCAAAACAAATACGCACCTGGGGGATGGAGG
AACGCTAGCACTGATAACCCTCCGAGCCGCATCTCCTTTCGTTGCTTCTG
TAGCTGATGGGGTTGCCTTCTACCTAACCTGTTTTGCAAACTGCTCTCGG
AGCCCCATTTTGCCCACCTCCAGTTCCCGCGCCACCCGTTCCTTCTTTGC
AGTCGCTTGTCGGTTTCACCCTGGAGACGCAGGCAGGCGCTGCTGCAGCC
GTGCGCCTTCACTGCGGGGTCTTTTTTGTGAAAAGGAAATACTCGCCTCC
TGCCCAGAGGAGGCATAGAGCTCGAGAGGAAAGCGCGTTGAGAGGCTAGA
GGAGCAGGTTCCTTGTTTTCCGCATGTCCCCACCTCTTAGTCGTGGGAGG
GCGACCTCCTCGGTTGGGCCGAGGGCTACCGCTCTGCTGCGAAAGCCCCA
GCGCCAGGATTTTCCACAAGTGTCTGTTCCAGCCCGGGGACGCGGTGCCA
GCTGCAAAATTGCGGAGCTCCGGGGCCACCTAGCCACTCTGTAGTCATCA
AGATGCTGCTCTGCACTGGCTTAGGACCCACAGACAGACCAAGTCAGTAG
TATTGAGCCCGTCATCTACAGACCTCCCAAGCATCCAATGACTTCTCCC
CACAATGCAGTGGGAGGCCTGGCGGCCGCCTGTTCAAAAATTGAGGTGAC
CTATAGAATTTCCGCGAAATTCTTCTGAGATGCTACTTGACTCATGTAAG
TCATAGGTAAACTCCACCTGAGGGAATCGTATTATTCTGGGAGAATGAAT
GGTAGGAGAAAATGCATAAACACTATTTGTAATACATGTACAAATGGTAT
GATCATCAGTAATGGAATCTCCTTCAGAGGCAGTTTATTGTGTCCTCCCA
CTGACTTTGGATATGAGGCCGAGATCACAGTTGTTTGAAATTTTCAGGGT
ATACTACTGTTGTTATTCTTTGAACTAATAATTTGAAGATGAGCATCTAA
CACATGAAATGCAATTTCTTACTTGTTTTGCTTTATAAATATCTTCAAAT
ATATGAAATGGGGTTATTTTAATTGATAGATGAAGATATTATTAAATGAT
TATATACTATTATTAAATGATTCAAAATATTTCTGGTTGGAAATTTTAGG
TTCCCAACTTTTATTTTAAGGATGCTCAAACAACATTCATTTATGAAATT
TCTACCTATTAAGGTTAGCATTTCTGGATTATGTTTTGAATTACCCTTGC
CAACCGGTTAAAAAAAAAATCCACCTTTCTTAAAAATTTGGTTAGACCAA
AAAAACCCTTTGAATTTTTTTGTTGCCCCAAATGGCAATAGAAACCCGGG
GAAAAATTGGGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_o22.b1 MSMg01no135_o22.b1 CHROMAT_FILE:
MSMg01no135_o22.b1 PHD_FILE: MSMg01no135_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:10 2005
         (239 letters)



>mm_chr8_101939448_101940086
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgcacctgggggatggaggaacgctagcactgataaccctccgagccgcatctcctttcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cgcacctgggggatggaggaacgctagcactgataaccctccgagccgcatctcctttcg 380

                                                                       
Query: 61  ttgcttctgtagctgatggggttgccttctacctaacctgttttgcaaactgctctcgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttgcttctgtagctgatggggttgccttctacctaacctgttttgcaaactgctctcgga 320

                                                                       
Query: 121 gccccattttgcccacctccagttcccgcgccacccgttccttctttgcagtcgcttgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gccccattttgcccacctccagttcccgcgccacccgttccttctttgcagtcgcttgtc 260

                                                                      
Query: 181 ggtttcaccctggagacgcaggcaggcgctgctgcagccgtgcgccttcactgcggggt 239
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 259 ggtttcaccctggagacgcaggcaggcgctgctgcagcggtgcgccttcactgcggggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no135_o22.g1 MSMg01no135_o22.g1 CHROMAT_FILE:
MSMg01no135_o22.g1 PHD_FILE: MSMg01no135_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:10 2005
         (411 letters)



>mm_chr8_101826848_101827658
          Length = 811

 Score =  725 bits (375), Expect = 0.0
 Identities = 402/411 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcttctgagatgctacttgactcatgtaagtcataggtaaactccacctgagggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 aattcttctgagatgctacttgactcatgtaagtcataggtaaactctacctgagggaat 260

                                                                       
Query: 61  cgtattattctgggagaatgaatggtaggagaaaatgcataaacactatttgtaatacat 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catattattctgggagaatgaatggtaggagaaaatgcataaacactatttgtaatacat 320

                                                                       
Query: 121 gtacaaatggtatgatcatcagtaatggaatctccttcagaggcagtttattgtgtcctc 180
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 321 gtacaaatggtatgatcatcagtaatagaatctccttcagaggcaatttattgtgtcctc 380

                                                                       
Query: 181 ccactgactttggatatgaggccgagatcacagttgtttgaaattttcagggtatactac 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ccactgactttggatatgaggccgagatcacagttgtttgaaatttttagggtatactac 440

                                                                       
Query: 241 tgttgttattctttgaactaataatttgaagatgagcatctaacacatgaaatgcaattt 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttgttattctaggaactaataatttgaagatgagcatctaacacatgaaatgcaattt 500

                                                                       
Query: 301 cttacttgttttgctttataaatatcttcaaatatatgaaatggggttattttaattgat 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 cttacttgttttgctttataaatatcttcaaatatatgaaatggggttattttagttgat 560

                                                              
Query: 361 agatgaagatattattaaatgattatatactattattaaatgattcaaaat 411
           ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 agatgaagatattattaaatgattatataatattattaaatgattcaaaat 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)