BAC Information

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BAC

Clone NameMSMg01-136F05
Chromosome8 (Build37)
Map Location 88,086,934 - 88,240,271
singlet/doubletdoublet
Overlap geneNeto2
Upstream geneCacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2
Downstream geneItfg1, LOC100040798, Phkb, LOC671665, LOC100040165, Abcc12, Lonp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136F05.T7 (MSMg01no136_f05.b1)MSMg01-136F05.TJ (MSMg01no136_f05.g1)
ACCAG342557AG342558
length720722
length of high quality
(start - end)		601 (82 - 682)641 (79 - 719)
definitionCHROMAT_FILE: MSMg01no136_f05.b1 PHD_FILE: MSMg01no136_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:40 2005CHROMAT_FILE: MSMg01no136_f05.g1 PHD_FILE: MSMg01no136_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,086,934 - 88,087,534)(88,239,625 - 88,240,271)
sequence
NCCCCCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTCTATTCCATGTAGAGAACATGTACCTTTCCTTCTCT
ACCTGCTGTAAGTCCATTTTCAGTTTTAAAAGTCCAGATAGGAAGCAAGC
ATAATAAGCACTCTGGTGATTTTCTATCTATCTATCTATTTATCTATCTG
TCTGTCTGTCTGTCTGTCTATCTATAGAGAGGACTGTTCACTGGTAAAGC
CTTCTTAAAATTTGCCACATGTAACCTGGGTTTAAGCTCCTTTAATCTAG
AGAATACTAAACAGAAAAAAAATGTAAAAGAACTCAGAAGGTTATGGTGT
TGTGTCCTGGCAATGGAAAAGTAAGACAATAGGACAATGCAGAATGTTTA
CATTTACCTATGCACACACTGTTAAACTATGAGGCCTTGTAAATTCCCTG
GTAAATCTTATCGAAAACACAAGGCAGCATTTCTACAGTACACGGTGTCA
TCTGTTACCGTGCTGTTGGCTTTGAATGGGTGTATGTAGCAGATACATAG
CAAAACATTTACAACCTCTTGTAAAAATCAACCAAGGAAACCTTGCCAAA
ACTAGTACATTTGGAATTGTTGGTCAAGAAACTTGTAGGCAAGCGGGCGT
GGAGGTGCACACCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCAGAT
TTCTGAGTTCGAGGCCAGCC

CCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCCCCATTTGCAAAATTGC
CTGGAAACATTGATCACTGTCGACACTTCCACTGTTTTCTATAATGGAAA
ACTCAACATCACATTAGAGGGACTTACTCTTAATCAAAAGGACTTAAACT
CTTCCAAACAGAGAACCTAGAATTCTGGAATGGGTACTTCAGTTTGCACC
ACAGGCCCTGAAAAGCAGATTATTTCTGACCCTGGTGTCTGGACCCATGT
TGCCTACCTGGTTCATAAAAAGGAAGTCCAGGAAGGTTATCTTTTCCCCT
CTCTTTCCTCCCCATGATACCTGTCATCAAGAAATGCATAGGGAAAATAC
CCAAGCCTAAGAATAACCCATTAGAAGAAAAGTACAGGAGGATACTGGGG
AGACTCATGAGTAAGAAGACCCTGAGGATTGTCTAGTGGCTGATTTAGCT
GCTCTAGAAAAGCAAATGATTTAATTAGGCAGAAATTACTACCTAGCCCA
CAACCCTCCTCCACCCTTATGAGCCCTTACTATAATGCTAGAGGACAAAG
ACCCAGAACAACAGACAAGCCCTATGAGGAAATACAGTGAAGAAGACACA
TGACTGGGCACACAAGTCCCACTGGAGCTTCCCACGTTATGTATATAATT
GGGCACTTGGTTATGACCAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_f05.b1 MSMg01no136_f05.b1 CHROMAT_FILE:
MSMg01no136_f05.b1 PHD_FILE: MSMg01no136_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:40 2005
         (601 letters)



>mm_chr8_88086734_88087734
          Length = 1001

 Score = 1147 bits (593), Expect = 0.0
 Identities = 599/601 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtacctttccttctctacctgctgtaagtccattttcagttttaaaagtccagatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtacctttccttctctacctgctgtaagtccattttcagttttaaaagtccagatag 260

                                                                       
Query: 61  gaagcaagcataataagcactctggtgattttctatctatctatctatttatctatctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagcaagcataataagcactctggtgattttctatctatctatctatttatctatctgt 320

                                                                       
Query: 121 ctgtctgtctgtctgtctatctatagagaggactgttcactggtaaagccttcttaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtctgtctgtctgtctatctatagagaggactgttcactggtaaagccttcttaaaat 380

                                                                       
Query: 181 ttgccacatgtaacctgggtttaagctcctttaatctagagaatactaaacagaaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgccacatgtaacctgggtttaagctcctttaatctagagaatactaaacagaaaaaaa 440

                                                                       
Query: 241 atgtaaaagaactcagaaggttatggtgttgtgtcctggcaatggaaaagtaagacaata 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 atgtaaaagaactcagaaggttatggtgttgtgtcctggcaatagaaaagtaagacaata 500

                                                                       
Query: 301 ggacaatgcagaatgtttacatttacctatgcacacactgttaaactatgaggccttgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggacaatgcagaatgtttacatttacctatgcacacactgttaaactatgaggccttgta 560

                                                                       
Query: 361 aattccctggtaaatcttatcgaaaacacaaggcagcatttctacagtacacggtgtcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattccctggtaaatcttatcgaaaacacaaggcagcatttctacagtacacggtgtcat 620

                                                                       
Query: 421 ctgttaccgtgctgttggctttgaatgggtgtatgtagcagatacatagcaaaacattta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgttaccgtgctgttggctttgaatgggtgtatgtagcagatacatagcaaaacattta 680

                                                                       
Query: 481 caacctcttgtaaaaatcaaccaaggaaaccttgccaaaactagtacatttggaattgtt 540
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 caacctcttgtaaaaatcaaccaaggaaaccttgccaaaactattacatttggaattgtt 740

                                                                       
Query: 541 ggtcaagaaacttgtaggcaagcgggcgtggaggtgcacacctttaatcccagcactcag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggtcaagaaacttgtaggcaagcgggcgtggaggtgcacacctttaatcccagcactcag 800

            
Query: 601 g 601
           |
Sbjct: 801 g 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no136_f05.g1 MSMg01no136_f05.g1 CHROMAT_FILE:
MSMg01no136_f05.g1 PHD_FILE: MSMg01no136_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:40 2005
         (641 letters)



>mm_chr8_88239425_88240471
          Length = 1047

 Score = 1197 bits (619), Expect = 0.0
 Identities = 638/647 (98%), Gaps = 6/647 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcccccatttgcaaaattgcctggaaacattgatcactgtcgacacttccactgtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 aatcccccatttgcaaaattgcctggaaacattgatcactgtcgacacttccactgtttt 788

                                                                       
Query: 61  ctataatggaaaactcaacatcacattagagggacttactcttaatcaaaaggacttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 787 ctataatggaaaactcaacatcacattagagggacttactcttaatcaagaggacttaaa 728

                                                                       
Query: 121 ctcttcca---aacagagaacctagaattctggaatgggtacttcagtttgcaccacagg 177
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 727 ctcttccaaacaacagagaacctagaattctggaatgggtacttcagtttgcaccacggg 668

                                                                       
Query: 178 ccctgaaaagcagattatttctgaccctggtgtctggacccatgttgcctacctggttca 237
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 667 ccctgaaaagcagattatttctgaccctggtgtctggacccatgtagcctacctggttca 608

                                                                       
Query: 238 taaaaaggaagtccaggaaggttatcttttcccctctctttcctccccatgatacctgtc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 taaaaaggaagtccaggaaggttatcttttcccctctctttcctccccatgatacctgtc 548

                                                                       
Query: 298 atcaagaaatgcatagggaaaatacccaagcctaagaataacccattagaagaaaagtac 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 atcaagaaatgcatagggaaaatacccaagcctaagaataacccattagaagaaaagtac 488

                                                                       
Query: 358 aggaggatactggggagactcatgagtaagaagaccctgaggattgtctagtggctgatt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aggaggatactggggagactcatgagtaagaagaccctgaggattgtctagtggctgatt 428

                                                                       
Query: 418 tagctgctctagaaaagcaaatgatttaattaggcagaaattactacctagcccacaacc 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tagctgctctagaaaagcaaatgatttaattaggcagaaattactacctagcccacaacc 368

                                                                       
Query: 478 ctcctccacccttatgagcccttactataatgctagaggacaaagacccagaacaacaga 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctcctccacccttatgagcccttactataatgctagaggacaaagacccagaacaacaga 308

                                                                       
Query: 538 caagccctatgaggaaatacagtgaagaagacacatgactgggcacacaagtcccactgg 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 caagccctatgaggaaatacagtgaagaagacacatgactgggcacacaagtcccactgg 248

                                                          
Query: 598 agcttcccacgttatgtat---ataattgggcacttggttatgacca 641
           |||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 247 agcttcccacgttatgtatatgataattgggcacttggttatgacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1047
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1037
Effective search space:   654347
Effective search space used:   654347
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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