CCTTTNNNTATCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAA
TCCGCGGAATTCGAAATAGTCCCGTTAGTTGGTCCAATTTAAACTTATCT
CTGTCTAGCTTACAAATGAACGAGACTAGACTATGGTTATTTTACTTGGC
TTTGACGATTACCGGGGGTCACCCCTAGTATAGGTTTCTAACTGCTGGCC
TGGCTACTTTCCAGTGCTGTACCCCAGATACTGGCTGTTTCTCCTGTGTT
CATGGTTCCACCTCTCCTCATGGCGACTTCCTCCTCTCTCCTGTGCTTTT
ATTCTCTTTCTTCCCTACCTGTGACACCCCCCATCCCCCAAATCAGGTAA
CTGAAAACCCACCTACCTCTATTCCCTCTAGTAATTAACTGTGTGCACAA
CCAATAGTTTTAAATTTACCCCCACCCTTTGCTCAACAAAAGCTGCTATG
CATGAGATATACATGTTCTTGAGGCAACCAGACAGACCCTGGGATAGAGG
ATTTAGCATTACAGTATAGAGCAACAGACCACACCTCAGCAAGCCAGCAT
ACACTTAGGATTCTCTCTTCCCATATAGAAGCGGGCCATCTTATTAATCT
CATCCATATATCATTTTATTTACCCTGATAAGATGCTTTTATGGAGAGCT
CTGGATATTTATTATAAACACCATTCTTATGTGTTT

GCCCCNNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAAAAACAAAACAAA
ACAAAACAAAACAAAACAAAAAAAACAAAAAACAAAAAAAAACAAAAAAA
AACCCCAAAAACCAAAAAACAAAACAAAACAACAACAACAACAAAAAAAC
ACTAAAAATAGTCTTTCCATATGGTCTTGTAATCCTACTTTTGAGTATAC
ATTAAATAATTGAAAGCAGGATCTTAAGCAGATAATTTGCAGAACCATGC
TTGGAGCAGAAATAGTCATAAGAGCCCAAAGCAGAGGCAACCCAAATGCC
CACCAAGGGATTAATGAGCAAGCATATGGTATAAATGCACAATGGAATAC
TATTCAGCCTTAAAAAGTAATAACATTGCCCACACACGCTGCAAGATGGA
CAAAGTGTACGGTCAGCTTGCCAAGTGATAGAATCCATCACAACTGCTTA
CATGAGGAATCCATGACAGTCAAACTCATGGGAACTGAAGAGCTAAAATG
GTAGTTAGCAAGGACTTGTGAAAGAGGAAATGGGCGTGGGGGAGTTTTTC
TTTCCTTCCTCTTCTTTTCCCTTTTTTTCTTCTTTTTTTTTTTCTTTTTT
TTTCCCCCCTATTTTCTCCCTCTTAACTTATCCTTTTATTCCTATTTA

Query= MSMg01no136_i17.b1 MSMg01no136_i17.b1 CHROMAT_FILE:
MSMg01no136_i17.b1 PHD_FILE: MSMg01no136_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:58 2005
         (606 letters)



>mm_chr8_95101180_95102185
          Length = 1006

 Score =  603 bits (312), Expect = e-176
 Identities = 333/344 (96%), Gaps = 8/344 (2%)
 Strand = Plus / Minus

                                                                        
Query: 267  atcaggtaactgaaaacccacctacctctattccctctagtaattaactgtgtgcacaac 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 atcaggtaactgaaaacccacctacctctattccctctagtaattaactgtgtgcacaac 947

                                                                        
Query: 327  caatagttttaaattta----cccccaccctttgctcaacaaaagctgctatgcatgaga 382
            |||||||||||||||||        ||   ||||||||||||||||||||||||||||||
Sbjct: 946  caatagttttaaatttagggg----caaggtttgctcaacaaaagctgctatgcatgaga 891

                                                                        
Query: 383  tatacatgttcttgaggcaaccagacagaccctgggatagaggatttagcattacagtat 442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890  tatacatgttcttgaggcaaccagacagaccctgggatagaggatttagcattacagtat 831

                                                                        
Query: 443  agagcaacagaccacacctcagcaagccagcatacacttaggattctctcttcccatata 502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830  agagcaacagaccacacctcagcaagccagcatacacttaggattctctcttcccatata 771

                                                                        
Query: 503  gaagcgggccatcttattaatctcatccatatatcattttatttaccctgataagatgct 562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  gaagcgggccatcttattaatctcatccatatatcattttatttaccctgataagatgct 711

                                                        
Query: 563  tttatggagagctctggatatttattataaacaccattcttatg 606
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  tttatggagagctctggatatttattataaacaccattcttatg 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)