Query= MSMg01no136_k05.b1 MSMg01no136_k05.b1 CHROMAT_FILE:
MSMg01no136_k05.b1 PHD_FILE: MSMg01no136_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:05 2005
(466 letters)
>mm_chr8_107955545_107956417
Length = 873
Score = 799 bits (413), Expect = 0.0
Identities = 452/469 (96%), Gaps = 7/469 (1%)
Strand = Plus / Plus
Query: 5 gaattcagtttcatttccctcaccttacatcattagagctccctaaaattacacctccca 64
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtttcatttacatcaccttacatcattagagctccctaaaattacacctccca 264
Query: 65 tccccgaggctcctgcacattgattgcggcgataattgagataattgatttccttagaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccccgaggctcctgcacattgattgcggcgataattgagataattgatttccttagaga 324
Query: 125 ctggtgagtcatctgcatccattgctgtgaacactctcaacctccctggcttctcaacc- 183
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 325 ctggtgagtcatctgcatccattgctgcgaatactctcaacctccctggcttctcaacca 384
Query: 184 ------tccccagctgcagaatctcttgtgtttgcagcctgtaacgtaactgccattaac 237
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 agctcctccccagctgcagaatctcttgtgtttgcaacctgtaacgtaactgccattaac 444
Query: 238 agaacagtattacattagcacagacaaaaattcatgacttaaaatatacaatgagttaaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaacagtattacattagcacagacaaaaattcatgacttaaaatatacaatgagttaaa 504
Query: 298 gtataccatctccattgagaataaactgccttagtagacagcccattttccaagggcttt 357
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtatacaatctccattgagaataaactgccttagtagacagcccattttccaagggcttt 564
Query: 358 agaaacaccactgttgcccttccggtacaaattaaggtgattgtaccacattaatggcca 417
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaaacaccactgttggttttccggtacaaattaaggtgattgtaccacattaatggcca 624
Query: 418 cgtctcagactcagagaaagctttctgttgtatctgatgcacccttgtg 466
|| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cgcctcagactcagagaaagctttctgttgtatctgatgcacccttgtg 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 873
Length adjustment: 10
Effective length of query: 456
Effective length of database: 863
Effective search space: 393528
Effective search space used: 393528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_k05.g1 MSMg01no136_k05.g1 CHROMAT_FILE:
MSMg01no136_k05.g1 PHD_FILE: MSMg01no136_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:05 2005
(290 letters)
>mm_chr8_108115811_108116500
Length = 690
Score = 553 bits (286), Expect = e-162
Identities = 289/290 (99%)
Strand = Plus / Minus
Query: 1 ctgagggttgtggaaggctccagtggaactttaaaaatgctttgttgttgctgttgtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ctgagggttgtggaaggctccagtggaactttaaaaatgctttgttgttgctgttgtttt 614
Query: 61 attgacagggtcttgctatgtagcccgggctagcactatattgcccaggacagtctcaaa 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 613 attgacagggtcttgctatgtagcccggactagcactatattgcccaggacagtctcaaa 554
Query: 121 ttcttggcaatctttctatctcagccttgaaagtgatgggattataggtgtgtgcaccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttcttggcaatctttctatctcagccttgaaagtgatgggattataggtgtgtgcaccat 494
Query: 181 gccatgctaaaaatatgttttacaaatatattgatgatagaaggcagctggatgaacctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gccatgctaaaaatatgttttacaaatatattgatgatagaaggcagctggatgaacctg 434
Query: 241 gcaatgaattaagcttaaatgacatttgaaaagcaactttggccgggcgg 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gcaatgaattaagcttaaatgacatttgaaaagcaactttggccgggcgg 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
