BAC Information

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BAC

Clone NameMSMg01-137D01
Chromosome8 (Build37)
Map Location 87,525,978 - 87,526,439
singlet/doubletsinglet
Overlap geneHook2
Upstream gene1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb
Downstream geneBest2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137D01.T7 (MSMg01no137_d01.b1)MSMg01-137D01.TJ (MSMg01no137_d01.g1)
ACCAG343187AG343188
length716804
length of high quality
(start - end)
438 (71 - 508)225 (69 - 293)
definitionCHROMAT_FILE: MSMg01no137_d01.b1 PHD_FILE: MSMg01no137_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:48 2005CHROMAT_FILE: MSMg01no137_d01.g1 PHD_FILE: MSMg01no137_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGAGGCGC
GGAATTCTGGGGACTCCCCGTGGGTGGCCTCTGCTTGGGTTCCAGGGTCT
GAATGACCTAGGAATTGGGGGGGGGGAGCGGAGCACAGGAGAGCAACCTT
CACTATAATAATAGTGACATTTTGCAGTCCTGGGGACTGATTGTTCCTAA
GGCCTCATGCATGCTAGGCAACACAGTTGTATTACTAGCATCATTTTGTT
TTGTTGTTTGAGACAAGGCTCAAACTTGTGATCCTCTTGCCTCTGGGTCA
CAGATGCCACCATACCTGGTTCTACCTCTACCACTCCCCCACCCCACCCC
CGTGTGTGTGTGTGTATGTATGTGTGTGTGTGCGCGCGCGCGCACGTATT
TCTTCGTACAGAGTCTCAATATGTAGCCTGGCTGACCTCAAACTCAGAGT
TGTTGCTGCCTCTACCCCCCTAGTTCTAGGAATAACAGATTACAGTACCA
TTCCCCGCTCATTCTGTCTAAGCCTGCACAATATTTGGTAACACAGAGCT
GAACCACCCAGGCCCCTTGCTTTGGCTTTATGTTATATATTCACTCCTTT
TTTTACAGGTTTTTCGAGATACGGCCTCTCTGCACAGTCTTGCGCGTTTT
GGAACTTACTCTGTATACCCGGTTGTCCTCGCACCTTCCAATCCACTTGT
CTCTGCCTTTCCGCGG
TACAGTGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTCCGAAATTCTGGCTTCAAAACAGTCTGACAAGCGCAACC
CCTCTCCAGCCAAGTANAAACAAATACCCTCTACTTTAGACTTCTGACCC
TGGGGATAACCCAGCCTCCCTTCCCAGAAGTCCTTGCATTCATGGACTAN
CATGGGTCAAANAAACAGCTGGACTGGNAATAGGTGGGTAGGTGATCTTA
CATTTGGCCGGTCGGATCTGTGTCTTCTCTGCAAACAAAGGACAAAACCC
CACACTGAAGGCNNTGGCCGTTTTTTTTTTTTCCNNTCTCCACCTTCCAA
AACCCCTTGCACTTAACCCTTTGTTTTCCCCCCCCCCCAACCTTCCTGAT
GTTTTCTAAAAAACCCCAATCCAGCCGTACTGCGCTCACACCGCGCGAGA
CCCTCTAGGGAATGATNCCGTGACCTTGGCGGACCCTACCTGTAAGTTTC
AANTTAAGGGAAATTCCTTTCACACCCCACCACTTACGGTGGGTGTTNNN
NAATNNTCCCGGAACGGACCCCTAGCTAAACTTACTTCAAGGTGCTGTCA
CGTNNNNNTNAAANCNNNNCCGCCCCGGGGNCNNNNNNNNTAGGTNCNCT
AAGCAGGTGCCGTNGGCCGGNNNNNNNNTTNTNNTCTGCTTNTCNATATT
CTTTCTATCCATATCCTCCACTATCCTCTCTACCTATTTTCCTCCTTAAT
TGTGGATGTATTTTCCCTTCTGCGGNNNNTNTTTTNTCTCGCGTGGTGGG
CGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_d01.b1 MSMg01no137_d01.b1 CHROMAT_FILE:
MSMg01no137_d01.b1 PHD_FILE: MSMg01no137_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:48 2005
         (438 letters)



>mm_chr8_87525811_87526648
          Length = 838

 Score =  665 bits (344), Expect = 0.0
 Identities = 421/464 (90%), Gaps = 28/464 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggtggcctctgcttgggttccagggtctgaatgacctaggaattggggggggggagcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | |
Sbjct: 629 tgggtggcctctgcttgggttccagggtctgaatgacctaggaatt--ggggggggtgtg 572

                                                                       
Query: 61  gagcacaggagagcaaccttcactataataatagtgacattttgcagtcctggggactga 120
           |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 571 gagcacaggagagcaaccttcattataataatagtgacattttgcagtcccggggactga 512

                                                                       
Query: 121 ttgttcctaaggcctcatgcatgctaggcaacacagttgtattactagcatcattttgtt 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttgttcctaaggcctcatgcattctaggcaacacagttgtattactagcatcattttgtt 452

                                                                       
Query: 181 ttgttgtttgagacaaggctcaaacttgtgatcctcttgcctctgggtcacagatgccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttgttgtttgagacaaggctcaaacttgtgatcctcttgcctctgggtcacagatgccac 392

                                                                       
Query: 241 catacctggttctacctctaccactcccccaccccacccccgtgtgtgtgtgtgtatgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 391 catacctggttctacctctaccactcccccaccccacccccgtgtgtgtgtgtgtgtgtg 332

                                                                       
Query: 301 tgtgtgtgtgtgcgcg--------------------------cgcgcgcacgtatttctt 334
           |||||||||||| | |                          |||||||| |||||||||
Sbjct: 331 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcatgtatttctt 272

                                                                       
Query: 335 cgtacagagtctcaatatgtagcctggctgacctcaaactcagagttgttgctgcctcta 394
           |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cgtacagagtctcagtatgcagcctggctgacctcaaactcagagttgttgctgcctcta 212

                                                       
Query: 395 cccccctagttctaggaataacagattacagtaccattccccgc 438
           |||||||||| |||||||||| ||||||||| ||||||||||||
Sbjct: 211 cccccctagtgctaggaataaaagattacagcaccattccccgc 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)