BAC Information

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BAC

Clone NameMSMg01-137G23
Chromosome8 (Build37)
Map Location 62,392,831 - 62,393,465
singlet/doubletsinglet
Overlap genenone
Upstream geneBC030500, LOC665116, LOC436042
Downstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137G23.T7 (MSMg01no137_g23.b1)MSMg01-137G23.TJ (MSMg01no137_g23.g1)
ACCAG343363AG343364
length719711
length of high quality
(start - end)
668 (49 - 716)635 (72 - 706)
definitionCHROMAT_FILE: MSMg01no137_g23.b1 PHD_FILE: MSMg01no137_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:07 2005CHROMAT_FILE: MSMg01no137_g23.g1 PHD_FILE: MSMg01no137_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGC
GGAATTCTCACCTGATGCATACCGAATGGCAGAGAAGCACCTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTCAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGGAAATTGGACATAGTACTACCGGAGGATCAAGCAATACCTATCCTGGG
CATATATCCAGAAGATGCCCCAAGTGGTAAGAAGGACACATGCTCCATTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCAAAAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACTACTCCGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCA
AATGGATGGACCTGGAGGGCATCATTCTGAGTGAGGTAACACATTCACAA
AGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAAC
CTAGGATACCCAAGATAAAAGATACAATTTCCTAAACACATGAAACTCAA
GAAAAATGAAGACTGAAGT
NCCATGCAGTGNGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTACTTATTTTTAGAGTTTTCGAACTAT
TTCCTCATAGCACCTATTGAGAACATAAGAATTATGCTTATTTTGATTTT
AGAAAAGAGTGTGAAAATATTGGTATTGCATATTAACAATCCAACTTTCT
GTTGCCCCAACCTAAATAAAATTGATTACTTGGAAAATTAAAAACATGTT
CTTCCTCCTTAAATGAGAGTTAAGGTGTTCTGTGTTCTTGGAGGAATGTT
AGTATTCAAGGTCAGACACACACACTACAGTCTCCCCTTATATCTGAATC
TGTTCTAGCTGTACCTTAGGTGCTCAACAGCTCTACACATATATAATTAC
TCTCTAGACTCACACATGCAAACATTTAAAATATGTTCAATAAGTGAATA
GATATTTTCTTTAAGGGCTTTTGCATCCACTGAAGCCTTACTCCCCTTTC
TATAAAAAGGATACATTTGGGAGGAGAAATGATAAAATCCCCAGCAGGAC
GTTAATACCTACTGAGATCTTCTGACAGCACCGAGACTCCTCTAAAGCCT
CATAAGTGTGTGAGATCTGGTCTTTGTAAAAATGAGTCAGGACTTGCTTG
GTGACAGGTACAATCTTCCATTTCTTAAGTTATTTTTATCTTTAGAACAC
GATTTTGTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_g23.g1 MSMg01no137_g23.g1 CHROMAT_FILE:
MSMg01no137_g23.g1 PHD_FILE: MSMg01no137_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:07 2005
         (635 letters)



>mm_chr8_62392631_62393665
          Length = 1035

 Score = 1189 bits (615), Expect = 0.0
 Identities = 630/635 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attacttatttttagagttttcgaactatttcctcatagcacctattgagaacataagaa 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 835 attacttatttttagagttttcgaactatttccttatagcacctattgagaacataagaa 776

                                                                       
Query: 61  ttatgcttattttgattttagaaaagagtgtgaaaatattggtattgcatattaacaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ttatgcttattttgattttagaaaagagtgtgaaaatattggtattgcatattaacaatc 716

                                                                       
Query: 121 caactttctgttgccccaacctaaataaaattgattacttggaaaattaaaaacatgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 caactttctgttgccccaacctaaataaaattgattacttggaaaattaaaaacatgttc 656

                                                                       
Query: 181 ttcctccttaaatgagagttaaggtgttctgtgttcttggaggaatgttagtattcaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ttcctccttaaatgagagttaaggtgttctgtgttcttggaggaatgttagtattcaagg 596

                                                                       
Query: 241 tcagacacacacactacagtctccccttatatctgaatctgttctagctgtaccttaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tcagacacacacactacagtctccccttatatctgaatctgttctagctgtaccttaggt 536

                                                                       
Query: 301 gctcaacagctctacacatatataattactctctagactcacacatgcaaacatttaaaa 360
           |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 535 gctcaacagctctacatatatataattgctctctagactcacacatgcaaacatttaaaa 476

                                                                       
Query: 361 tatgttcaataagtgaatagatattttctttaagggcttttgcatccactgaagccttac 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tacgttcaataagtgaatagatattttctttaagggcttttgcatccactgaagccttac 416

                                                                       
Query: 421 tcccctttctataaaaaggatacatttgggaggagaaatgataaaatccccagcaggacg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tcccctttctataaaaaggatacatttgggaggagaaatgataaaatccccagcaggacg 356

                                                                       
Query: 481 ttaatacctactgagatcttctgacagcaccgagactcctctaaagcctcataagtgtgt 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 355 ttaatacctactgagatcttctgacagcaccgagactcctctaaagcctcataagtctgt 296

                                                                       
Query: 541 gagatctggtctttgtaaaaatgagtcaggacttgcttggtgacaggtacaatcttccat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gagatctggtctttgtaaaaatgagtcaggacttgcttggtgacaggtacaatcttccat 236

                                              
Query: 601 ttcttaagttatttttatctttagaacacgatttt 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 ttcttaagttatttttatctttagaacacgatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)